<STREME version="5.3.2" release="Fri Feb 5 17:50:07 2021 -0800">
  <model>
    <command_line>streme -p common/Klf1-200.fa -oc results/streme9 -objfun cd -minw 6 -maxw 10 -pvt 0.001 -patience 2 -dna -nref 5 -verbosity 1</command_line>
    <train_positives count="180" positions="90179" file="common/Klf1-200.fa"/>
    <train_negatives count="0" positions="0" from="none"/>
    <test_positives count="20" positions="10019"/>
    <test_negatives count="0" positions="0"/>
    <sequence_db/>
    <alphabet name="DNA" like="dna">
      <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
      <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
      <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
      <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
      <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
      <letter id="V" symbol="V" equals="ACG" name="Not T"/>
      <letter id="H" symbol="H" equals="ACT" name="Not G"/>
      <letter id="D" symbol="D" equals="AGT" name="Not C"/>
      <letter id="B" symbol="B" equals="CGT" name="Not A"/>
      <letter id="M" symbol="M" equals="AC" name="Amino"/>
      <letter id="R" symbol="R" equals="AG" name="Purine"/>
      <letter id="W" symbol="W" equals="AT" name="Weak"/>
      <letter id="S" symbol="S" equals="CG" name="Strong"/>
      <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
      <letter id="K" symbol="K" equals="GT" name="Keto"/>
    </alphabet>
    <strands>both</strands>
    <background A="0.256" C="0.244" G="0.244" T="0.256" from="dataset"/>
    <stop pvt="0.001"/>
    <objfun>Central Distance</objfun>
    <test>Cumulative Bates Distribution</test>
    <minw>6</minw>
    <maxw>10</maxw>
    <kmer>3</kmer>
    <hofract>0.1</hofract>
    <neval>25</neval>
    <nref>5</nref>
    <niter>20</niter>
    <patience>2</patience>
    <seed>0</seed>
    <useer>no</useer>
    <minscore>0</minscore>
    <ignore_depth>5</ignore_depth>
    <nsubsets>1</nsubsets>
    <min_pal_ratio>0.85</min_pal_ratio>
    <max_pal_ed>5</max_pal_ed>
    <cand>no</cand>
    <experimental>no</experimental>
    <totallength>0</totallength>
    <host>Timothys-Mac-Mini.local</host>
  </model>
  <motifs>
    <motif id="1-GATAAGAGAC" alt="STREME-1" width="10" initial_width="7" seed="GATAAGAGAC" score_threshold="6.50872" train_pos_count="123" train_neg_count="0" train_log_pvalue="-69.393" train_pvalue="4.0e-070" train_dtc="9.9" train_bernoulli="-1" test_pos_count="15" test_neg_count="0" test_log_pvalue="-1.56755" test_pvalue="2.7e-002" test_dtc="87.3" test_bernoulli="0" is_palindromic="no" elapsed_time="0.8">
      <pos A="0.0282995" C="0.00947957" G="0.915105" T="0.0471158"/>
      <pos A="0.79085" C="0.056431" G="0.105603" T="0.0471158"/>
      <pos A="7.51343e-05" C="0.0941527" G="0.0354873" T="0.870285"/>
      <pos A="0.807334" C="0.0565202" G="0.0659283" T="0.0702172"/>
      <pos A="0.868068" C="0.0565202" G="0.0565202" T="0.0188914"/>
      <pos A="0.0906102" C="0.0659283" G="0.796346" T="0.0471158"/>
      <pos A="0.727304" C="0.0791336" G="0.174671" T="0.0188914"/>
      <pos A="0.151052" C="0.163807" G="0.589253" T="0.0958887"/>
      <pos A="0.538143" C="0.141327" G="0.167902" T="0.152629"/>
      <pos A="0.101713" C="0.576792" G="0.168569" T="0.152927"/>
    </motif>
    <motif id="2-TGCAAACAGA" alt="STREME-2" width="10" initial_width="4" seed="TGCAAACAGA" score_threshold="6.37693" train_pos_count="111" train_neg_count="0" train_log_pvalue="-64.4079" train_pvalue="3.9e-065" train_dtc="8.4" train_bernoulli="-1" test_pos_count="15" test_neg_count="0" test_log_pvalue="-1.21123" test_pvalue="6.1e-002" test_dtc="94.3" test_bernoulli="0" is_palindromic="no" elapsed_time="0.4">
      <pos A="0.0938147" C="0.0203982" G="0.0407192" T="0.845068"/>
      <pos A="0.135134" C="0.0339808" G="0.797129" T="0.0337559"/>
      <pos A="0.0610442" C="0.79224" G="0.111843" T="0.0348726"/>
      <pos A="0.814832" C="0.0712008" G="0.020573" T="0.0933939"/>
      <pos A="0.86326" C="0.0408941" G="0.0305587" T="0.0652872"/>
      <pos A="0.794302" C="0.0937735" G="0.0407192" T="0.0712047"/>
      <pos A="0.0915258" C="0.734742" G="0.0813613" T="0.0923709"/>
      <pos A="0.786394" C="0.0915218" G="0.0712008" T="0.0508837"/>
      <pos A="0.0712831" C="0.11707" G="0.614838" T="0.196809"/>
      <pos A="0.598078" C="0.16282" G="0.0967731" T="0.142328"/>
    </motif>
  </motifs>
  <reason_for_stopping>Stopped because 2 consecutive motifs exceeded the p-value threshold (0.001).</reason_for_stopping>
  <run_time cpu="0.80"/>
</STREME>
