<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<mast version="5.3.2" release="Fri Feb 5 17:50:07 2021 -0800">
	<command_line><arg>mast</arg><arg>-oc</arg><arg>results/mast5</arg><arg>-nostatus</arg><arg>/Users/t.bailey/meme_git/meme/tests/meme/meme.crp0.de.zoops.xml</arg><arg>common/crp0.s</arg></command_line>
	<settings strand_handling="combine" max_correlation="0.60" remove_correlated="n" max_seq_evalue="10" adjust_hit="n" max_hit_pvalue="0.0001" max_weak_pvalue="0.0001"/>
	<alphabet name="DNA" like="dna">
		<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
		<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
		<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
		<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
		<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
		<letter id="V" symbol="V" equals="ACG" name="Not T"/>
		<letter id="H" symbol="H" equals="ACT" name="Not G"/>
		<letter id="D" symbol="D" equals="AGT" name="Not C"/>
		<letter id="B" symbol="B" equals="CGT" name="Not A"/>
		<letter id="M" symbol="M" equals="AC" name="Amino"/>
		<letter id="R" symbol="R" equals="AG" name="Purine"/>
		<letter id="W" symbol="W" equals="AT" name="Weak"/>
		<letter id="S" symbol="S" equals="CG" name="Strong"/>
		<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
		<letter id="K" symbol="K" equals="GT" name="Keto"/>
	</alphabet>
	<background source="--nrdb--" A="0.274262" C="0.22521" G="0.22521" T="0.274262"/>
	<motif_dbs>
		<motif_db source="/Users/t.bailey/meme_git/meme/tests/meme/meme.crp0.de.zoops.xml" last_mod_date="Sat Jan 30 16:48:09 2021">
			<background A="0.304" C="0.196" G="0.196" T="0.304"/>
		</motif_db>
	</motif_dbs>
	<motifs>
		<motif db="0" id="KGMGYDDKBTCA" alt="MEME-1" length="12" nsites="7" evalue="7.5e-001">
			<pos A="-945" C="-45" G="54" T="91"/>
			<pos A="-945" C="-45" G="213" T="-945"/>
			<pos A="91" C="113" G="-945" T="-945"/>
			<pos A="-945" C="-945" G="213" T="-109"/>
			<pos A="-945" C="54" G="-45" T="91"/>
			<pos A="-9" C="-945" G="54" T="49"/>
			<pos A="-9" C="-945" G="113" T="-9"/>
			<pos A="-945" C="-945" G="154" T="49"/>
			<pos A="-945" C="113" G="54" T="-9"/>
			<pos A="-945" C="-945" G="54" T="123"/>
			<pos A="-945" C="235" G="-945" T="-945"/>
			<pos A="172" C="-945" G="-945" T="-945"/>
		</motif>
		<motif db="0" id="TSTKTAAYTGTG" alt="MEME-2" length="12" nsites="7" evalue="9.9e-001">
			<pos A="-945" C="-945" G="-45" T="149"/>
			<pos A="-109" C="54" G="154" T="-945"/>
			<pos A="-945" C="54" G="-945" T="123"/>
			<pos A="-945" C="-945" G="113" T="91"/>
			<pos A="-945" C="-945" G="-45" T="149"/>
			<pos A="172" C="-945" G="-945" T="-945"/>
			<pos A="172" C="-945" G="-945" T="-945"/>
			<pos A="-109" C="54" G="-945" T="91"/>
			<pos A="-109" C="-945" G="-945" T="149"/>
			<pos A="-109" C="-945" G="187" T="-109"/>
			<pos A="-109" C="-945" G="-945" T="149"/>
			<pos A="-9" C="-945" G="187" T="-945"/>
		</motif>
	</motifs>
	<correlations>
		<correlation idx_a="0" idx_b="1" value="0.25"/>
	</correlations>
	<sequence_dbs>
		<sequence_db source="common/crp0.s" last_mod_date="Sun Mar  1 14:58:12 2020" seq_count="18" residue_count="1890"/>
	</sequence_dbs>
	<sequences>
		<sequence db="0" name="lac" comment="9 80" length="105">
			<score strand="both" combined_pvalue="3.18e-06" evalue="5.7e-05"/>
			<seg start="1">
				<data>
AACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTG
				</data>
				<hit pos="14" idx="0" rc="n" pvalue="4.1e-06" match="++++++ +++++"/>
			</seg>
			<seg start="76">
				<data>
TGTGGAATTGTGAGCGGATAACAATTTCAC
				</data>
				<hit pos="76" idx="1" rc="n" pvalue="1.3e-06" match="++++ +++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="tdc" comment="78" length="105">
			<score strand="both" combined_pvalue="5.01e-05" evalue="0.0009"/>
			<seg start="1">
				<data>
GATTTTTATACTTTAACTTGTTGATATTTAAAGGTATTTAATTGTAATAACGATACTCTGGAAAGTATTGAAAGT
				</data>
				<hit pos="35" idx="1" rc="n" pvalue="1.5e-05" match="+ +++++++++ "/>
			</seg>
			<seg start="76">
				<data>
TAATTTGTGAGTGGTCGCACATATCCTGTT
				</data>
				<hit pos="83" idx="0" rc="n" pvalue="7.2e-06" match="++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="deop2" comment="7 60" length="105">
			<score strand="both" combined_pvalue="8.44e-05" evalue="0.0015"/>
			<seg start="1">
				<data>
AGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATC
				</data>
				<hit pos="55" idx="1" rc="n" pvalue="1.1e-06" match="++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="bglr1" comment="76" length="105">
			<score strand="both" combined_pvalue="1.83e-04" evalue="0.0033"/>
			<seg start="1">
				<data>
ACAAATCCCAATAACTTAATTATTGGGATTTGTTATATATAACTTTATAAATTCCTAAAATTACACAAAGTTAAT
				</data>
				<hit pos="56" idx="1" rc="y" pvalue="1.6e-05" match=" + +++++++++"/>
			</seg>
			<seg start="76">
				<data>
AACTGTGAGCATGGTCATATTTTTATCAAT
				</data>
				<hit pos="81" idx="0" rc="n" pvalue="2.6e-05" match="+++++  +++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="male" comment="14" length="105">
			<score strand="both" combined_pvalue="2.26e-04" evalue="0.0041"/>
			<seg start="1">
				<data>
ACATTACCGCCAATTCTGTAACAGAGATCACACAAAGCGACGGTGGGGCGTAGGGGCAAGGAGGATGGAAAGAGG
				</data>
				<hit pos="15" idx="1" rc="n" pvalue="4.8e-05" match="++++++++ + +"/>
				<hit pos="47" idx="0" rc="n" pvalue="1.1e-05" match="+++++ ++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="pbr322" comment="53" length="105">
			<score strand="both" combined_pvalue="1.23e-03" evalue="0.022"/>
			<seg start="1">
				<data>
CTGGCTTAACTATGCGGCATCAGAGCAGATTGTACTGAGAGTGCACCATATGCGGTGTGAAATACCGCACAGATG
				</data>
				<hit pos="3" idx="1" rc="n" pvalue="3.7e-05" match=" ++++++++ ++"/>
				<hit pos="58" idx="0" rc="y" pvalue="9.5e-05" match="+++ + + ++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="tnaa" comment="71 " length="105">
			<score strand="both" combined_pvalue="1.68e-03" evalue="0.03"/>
			<seg start="76">
				<data>
TGATTCGATTCACATTTAAACAATTTCAGA
				</data>
				<hit pos="86" idx="1" rc="y" pvalue="1.8e-06" match="++++ +++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="malt" comment="41" length="105">
			<score strand="both" combined_pvalue="3.55e-02" evalue="0.64"/>
		</sequence>
		<sequence db="0" name="ara" comment="17 55" length="105">
			<score strand="both" combined_pvalue="8.02e-02" evalue="1.4"/>
		</sequence>
		<sequence db="0" name="malk" comment="29 61" length="105">
			<score strand="both" combined_pvalue="8.24e-02" evalue="1.5"/>
		</sequence>
		<sequence db="0" name="ce1cg" comment="17 61" length="105">
			<score strand="both" combined_pvalue="1.44e-01" evalue="2.6"/>
		</sequence>
		<sequence db="0" name="ilv" comment="39" length="105">
			<score strand="both" combined_pvalue="3.92e-01" evalue="7.1"/>
		</sequence>
		<sequence db="0" name="ompa" comment="48" length="105">
			<score strand="both" combined_pvalue="4.36e-01" evalue="7.9"/>
		</sequence>
		<sequence db="0" name="trn9cat" comment="1 84" length="105">
			<score strand="both" combined_pvalue="4.86e-01" evalue="8.7"/>
		</sequence>
		<sequence db="0" name="cya" comment="50" length="105">
			<score strand="both" combined_pvalue="4.95e-01" evalue="8.9"/>
		</sequence>
	</sequences>
	<runtime host="Timothys-Mac-Mini.local" when="Fri Feb  5 18:54:29 2021" cycles="7321" seconds="0.007"/>
</mast>
