GOMo - Submission form

The motifs to scan with and determine associated GO terms.

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Select the species' whose promoters wll be scanned for matches to each of your motifs. GOMo will look for enrichment of each motif in the promoters (-1000, +200bp relative to the TSS) of all annotated genes in your selected species. See the GOMo species database documentation for more information on the available promoter databases.

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The threshold above which results are not considered significant.

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GOMo calculates empirical p-values by shuffling the association between sequences and their score and determining how likely the actual result was by chance. Increasing the number of shuffling rounds can improve this calculation.

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Some datasets are setup to use multiple genomes but you can force GOMo to only use the main genome by deselecting this option.

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GOMo - Gene Ontology for Motifs
../doc/images/gomo_icon.png: GOMo Logo

Data Submission Form

Perform GO term association with DNA motifs.

motifs Input the motifs Upload or enter nucleotide motifs to analyze for association with GO terms. DNA_ALPHABET FILE register_component gomo_sequences Select the species Choose which species' promoters to analyze.

## Set the significance threshold

q-value <

## Set the number of score shuffling rounds

rounds:

## Use multiple genomes?

Use multiple genomes when available