<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
<!ATTLIST training_set primary_sequences CDATA #REQUIRED primary_count CDATA #REQUIRED primary_positions CDATA #REQUIRED
  control_sequences CDATA "" control_count CDATA "" control_positions CDATA "">
<!ELEMENT alphabet (letter*)>
<!ATTLIST alphabet name CDATA #REQUIRED>
<!ELEMENT ambigs (letter*)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ATTLIST letter equals CDATA #IMPLIED>
<!ATTLIST letter aliases CDATA #IMPLIED>
<!ATTLIST letter complement CDATA #IMPLIED>
<!ATTLIST letter name CDATA #IMPLIED>
<!ATTLIST letter colour CDATA #IMPLIED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  spfun,
  min_width,
  max_width,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_positions,
  seed,
  hsfrac,
  searchsize,
  maxsize,
  norand,
  csites,
  strands,
  brief,
  psp_file,
  priors_file,
  reason_for_stopping,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT spfun (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT hsfrac (#PCDATA)*>
<!ELEMENT searchsize (#PCDATA)*>
<!ELEMENT maxsize (#PCDATA)*>
<!ELEMENT norand (#PCDATA)*>
<!ELEMENT csites (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT brief (#PCDATA)*>
<!ELEMENT psp_file (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED
		   order CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif*)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                alt CDATA ""
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                llr CDATA #REQUIRED
                p_value CDATA #REQUIRED
                e_value CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site*)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref*)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites*)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value*)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array*)>

]>
<!-- Begin document body -->
<MEME version="5.3.2" release="Fri Feb 5 17:50:07 2021 -0800">
<training_set primary_sequences="common/crp0.s" primary_count="18" primary_positions="2730" control_sequences="Primary sequences shuffled preserving 2-mers" control_count="0" control_positions="0">
<alphabet name="DNA" like="dna">
<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
<letter id="V" symbol="V" equals="ACG" name="Not T"/>
<letter id="H" symbol="H" equals="ACT" name="Not G"/>
<letter id="D" symbol="D" equals="AGT" name="Not C"/>
<letter id="B" symbol="B" equals="CGT" name="Not A"/>
<letter id="M" symbol="M" equals="AC" name="Amino"/>
<letter id="R" symbol="R" equals="AG" name="Purine"/>
<letter id="W" symbol="W" equals="AT" name="Weak"/>
<letter id="S" symbol="S" equals="CG" name="Strong"/>
<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
<letter id="K" symbol="K" equals="GT" name="Keto"/>
</alphabet>
<sequence id="sequence_0" name="ce1cg" length="105" weight="1.000000" />
<sequence id="sequence_1" name="ara" length="105" weight="1.000000" />
<sequence id="sequence_2" name="bglr1" length="105" weight="1.000000" />
<sequence id="sequence_3" name="crp" length="105" weight="1.000000" />
<sequence id="sequence_4" name="cya" length="105" weight="1.000000" />
<sequence id="sequence_5" name="deop2" length="105" weight="1.000000" />
<sequence id="sequence_6" name="gale" length="105" weight="1.000000" />
<sequence id="sequence_7" name="ilv" length="105" weight="1.000000" />
<sequence id="sequence_8" name="lac" length="105" weight="1.000000" />
<sequence id="sequence_9" name="male" length="105" weight="1.000000" />
<sequence id="sequence_10" name="malk" length="105" weight="1.000000" />
<sequence id="sequence_11" name="malt" length="105" weight="1.000000" />
<sequence id="sequence_12" name="ompa" length="105" weight="1.000000" />
<sequence id="sequence_13" name="tnaa" length="105" weight="1.000000" />
<sequence id="sequence_14" name="uxu1" length="105" weight="1.000000" />
<sequence id="sequence_15" name="pbr322" length="105" weight="1.000000" />
<sequence id="sequence_16" name="trn9cat" length="105" weight="1.000000" />
<sequence id="sequence_17" name="tdc" length="105" weight="1.000000" />
<letter_frequencies>
<alphabet_array>
<value letter_id="A">0.307</value>
<value letter_id="C">0.193</value>
<value letter_id="G">0.193</value>
<value letter_id="T">0.307</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme -minsites 3 -maxsites 17 common/crp0.s -oc results/meme42 -mod zoops -dna -revcomp -nmotifs 2 -objfun nz -w 12 -hsfrac 0.5 -shuf 2 -nostatus -mpi </command_line>
<host>Timothys-Mac-Mini.local</host>
<type>zoops</type>
<nmotifs>2</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>Noise-injected mHG</object_function>
<spfun>log likelihood ratio (LLR)</spfun>
<min_width>12</min_width>
<max_width>12</max_width>
<substring>yes</substring>
<minsites>3</minsites>
<maxsites>17</maxsites>
<wnsites>0.8</wnsites>
<spmap>uni</spmap>
<spfuzz>0.5</spfuzz>
<prior>dirichlet</prior>
<beta>0.01</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_positions>2730</num_positions>
<seed>0</seed>
<hsfrac>0.5</hsfrac>
<searchsize>1890</searchsize>
<maxsize>0</maxsize>
<norand>no</norand>
<strands>both</strands>
<brief>1000</brief>
<psp_file></psp_file>
<priors_file></priors_file>
<reason_for_stopping>Stopped because requested number of motifs (2) found.</reason_for_stopping>
<background_frequencies source="--sequences--" order="0">
<alphabet_array>
<value letter_id="A">0.304</value>
<value letter_id="C">0.196</value>
<value letter_id="G">0.196</value>
<value letter_id="T">0.304</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="GCWTCKKTGSRG" alt="MEME-1" width="12" sites="17" ic="7.7" re="8.6" llr="102" p_value="2.6e-001" e_value="2.9e-001" bayes_threshold="8.39832" elapsed_time="0.209950">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">-37</value>
<value letter_id="C">-15</value>
<value letter_id="G">143</value>
<value letter_id="T">-237</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-137</value>
<value letter_id="C">196</value>
<value letter_id="G">-173</value>
<value letter_id="T">-237</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">80</value>
<value letter_id="C">-1073</value>
<value letter_id="G">-15</value>
<value letter_id="T">-5</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-37</value>
<value letter_id="C">-73</value>
<value letter_id="G">-1073</value>
<value letter_id="T">109</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-237</value>
<value letter_id="C">217</value>
<value letter_id="G">-1073</value>
<value letter_id="T">-237</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1073</value>
<value letter_id="C">-1073</value>
<value letter_id="G">107</value>
<value letter_id="T">95</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-237</value>
<value letter_id="C">-173</value>
<value letter_id="G">143</value>
<value letter_id="T">21</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-237</value>
<value letter_id="C">-73</value>
<value letter_id="G">-73</value>
<value letter_id="T">121</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-137</value>
<value letter_id="C">-73</value>
<value letter_id="G">143</value>
<value letter_id="T">-37</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-237</value>
<value letter_id="C">85</value>
<value letter_id="G">107</value>
<value letter_id="T">-78</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-5</value>
<value letter_id="C">-73</value>
<value letter_id="G">107</value>
<value letter_id="T">-78</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-137</value>
<value letter_id="C">-73</value>
<value letter_id="G">196</value>
<value letter_id="T">-1073</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.235294</value>
<value letter_id="C">0.176471</value>
<value letter_id="G">0.529412</value>
<value letter_id="T">0.058824</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.117647</value>
<value letter_id="C">0.764706</value>
<value letter_id="G">0.058824</value>
<value letter_id="T">0.058824</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.529412</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.176471</value>
<value letter_id="T">0.294118</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.235294</value>
<value letter_id="C">0.117647</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.647059</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.058824</value>
<value letter_id="C">0.882353</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.058824</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.411765</value>
<value letter_id="T">0.588235</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.058824</value>
<value letter_id="C">0.058824</value>
<value letter_id="G">0.529412</value>
<value letter_id="T">0.352941</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.058824</value>
<value letter_id="C">0.117647</value>
<value letter_id="G">0.117647</value>
<value letter_id="T">0.705882</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.117647</value>
<value letter_id="C">0.117647</value>
<value letter_id="G">0.529412</value>
<value letter_id="T">0.235294</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.058824</value>
<value letter_id="C">0.352941</value>
<value letter_id="G">0.411765</value>
<value letter_id="T">0.176471</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.294118</value>
<value letter_id="C">0.117647</value>
<value letter_id="G">0.411765</value>
<value letter_id="T">0.176471</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.117647</value>
<value letter_id="C">0.117647</value>
<value letter_id="G">0.764706</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[GA]C[AT][TA]C[TG][GT]T[GT][GC][GA]G
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_15" position="64" strand="minus" pvalue="6.12e-08" >
<left_flank>TTCTCCTTAC</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>TATTTCACAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="36" strand="plus" pvalue="1.70e-06" >
<left_flank>ATCACACAAA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>CGTAGGGGCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="0" strand="plus" pvalue="2.28e-05" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>TTTTTTGTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_0" position="23" strand="plus" pvalue="3.75e-05" >
<left_flank>GGTTTTTGTG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>AATAGCGCGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="89" strand="minus" pvalue="1.37e-04" >
<left_flank>GCTT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>ATGGCGTATA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_11" position="5" strand="plus" pvalue="1.68e-04" >
<left_flank>GATCA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>GTGAGTTGTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_10" position="26" strand="plus" pvalue="3.70e-04" >
<left_flank>TGAGAACACG</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>TAAACCGAGG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_13" position="63" strand="minus" pvalue="4.44e-04" >
<left_flank>AATCGAATCA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>GAGCAATATT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_6" position="66" strand="plus" pvalue="4.44e-04" >
<left_flank>CACACTTTTC</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TGCTATGGTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_12" position="80" strand="plus" pvalue="4.93e-04" >
<left_flank>TAAGTTTTCA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>ACTTTACATC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_16" position="69" strand="plus" pvalue="6.96e-04" >
<left_flank>AAGCCCTGGG</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>GAAAATGAGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_3" position="89" strand="minus" pvalue="1.61e-03" >
<left_flank>GCTA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>CACGGTAATG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_4" position="27" strand="plus" pvalue="2.32e-03" >
<left_flank>TGTAGCGCAT</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>TCAATCAGCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_5" position="86" strand="minus" pvalue="3.13e-03" >
<left_flank>TATTCTA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>CAACACACTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_17" position="89" strand="minus" pvalue="3.82e-03" >
<left_flank>AACA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>CCACTCACAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="34" strand="minus" pvalue="3.82e-03" >
<left_flank>ATAAAGTGTA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>CCTAATGAGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_1" position="33" strand="minus" pvalue="5.00e-03" >
<left_flank>ATCAATGTGG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>TGATTATAGA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_2" name="RCRBATAAMAAA" alt="MEME-2" width="12" sites="14" ic="13.5" re="12.3" llr="119" p_value="2.7e-001" e_value="3.1e-001" bayes_threshold="7.08163" elapsed_time="0.395965">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">72</value>
<value letter_id="C">-46</value>
<value letter_id="G">87</value>
<value letter_id="T">-1045</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-209</value>
<value letter_id="C">200</value>
<value letter_id="G">-1045</value>
<value letter_id="T">-109</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">23</value>
<value letter_id="C">-1045</value>
<value letter_id="G">154</value>
<value letter_id="T">-209</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-209</value>
<value letter_id="C">113</value>
<value letter_id="G">13</value>
<value letter_id="T">-9</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">137</value>
<value letter_id="C">-1045</value>
<value letter_id="G">-145</value>
<value letter_id="T">-109</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1045</value>
<value letter_id="C">13</value>
<value letter_id="G">-1045</value>
<value letter_id="T">137</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">149</value>
<value letter_id="C">-46</value>
<value letter_id="G">-1045</value>
<value letter_id="T">-1045</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">161</value>
<value letter_id="C">-1045</value>
<value letter_id="G">-1045</value>
<value letter_id="T">-209</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">91</value>
<value letter_id="C">113</value>
<value letter_id="G">-1045</value>
<value letter_id="T">-1045</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">161</value>
<value letter_id="C">-1045</value>
<value letter_id="G">-145</value>
<value letter_id="T">-1045</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">172</value>
<value letter_id="C">-1045</value>
<value letter_id="G">-1045</value>
<value letter_id="T">-1045</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">123</value>
<value letter_id="C">-145</value>
<value letter_id="G">-1045</value>
<value letter_id="T">-50</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.500000</value>
<value letter_id="C">0.142857</value>
<value letter_id="G">0.357143</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.071429</value>
<value letter_id="C">0.785714</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.142857</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.357143</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.571429</value>
<value letter_id="T">0.071429</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.071429</value>
<value letter_id="C">0.428571</value>
<value letter_id="G">0.214286</value>
<value letter_id="T">0.285714</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.785714</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.071429</value>
<value letter_id="T">0.142857</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.214286</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.785714</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.857143</value>
<value letter_id="C">0.142857</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.928571</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.071429</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.571429</value>
<value letter_id="C">0.428571</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.928571</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.071429</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.714286</value>
<value letter_id="C">0.071429</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.214286</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[AG]C[GA][CTG]A[TC]AA[AC]AA[AT]
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_6" position="0" strand="plus" pvalue="2.85e-07" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>CGGCTAAATT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_11" position="64" strand="plus" pvalue="2.77e-06" >
<left_flank>GCAAATTCAG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>ACGTCATCGC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="15" strand="minus" pvalue="3.56e-06" >
<left_flank>GTACTGAATT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AAACCCCGCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="88" strand="plus" pvalue="6.60e-06" >
<left_flank>GGAATTGTGA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TTCAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_1" position="7" strand="plus" pvalue="8.68e-06" >
<left_flank>GACAAAA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AGTGTCTATA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_5" position="60" strand="minus" pvalue="4.59e-05" >
<left_flank>ACACTTCGAT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TAAGGAAATC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_10" position="92" strand="minus" pvalue="4.95e-05" >
<left_flank>T</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCGCCACGAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_2" position="28" strand="minus" pvalue="7.12e-05" >
<left_flank>TTATAAAGTT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCCCAATAAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="78" strand="plus" pvalue="8.24e-05" >
<left_flank>AAAGAGGTTG</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>ACTAGAGTCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_12" position="0" strand="plus" pvalue="8.77e-05" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GATTAAACAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_13" position="0" strand="minus" pvalue="1.67e-04" >
<left_flank>AAGAATTTTA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="17" strand="minus" pvalue="1.77e-04" >
<left_flank>ATTGGGTTAA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>AATTTCACTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_0" position="60" strand="minus" pvalue="1.77e-04" >
<left_flank>TTTTGTGAAA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>ACAGTCTTTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_17" position="1" strand="minus" pvalue="1.89e-04" >
<left_flank>CAACAAGTTA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>C</right_flank>
</contributing_site>
</contributing_sites>
</motif>
</motifs>
<scanned_sites_summary p_thresh="0.0001">
<scanned_sites sequence_id="sequence_0" pvalue="2.16e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="23" pvalue="3.75e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_1" pvalue="7.87e-03" num_sites="2"><scanned_site motif_id="motif_2" strand="plus" position="7" pvalue="8.68e-06"/>
<scanned_site motif_id="motif_2" strand="minus" position="90" pvalue="9.37e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_2" pvalue="6.25e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="minus" position="28" pvalue="7.12e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_3" pvalue="2.43e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_4" pvalue="4.76e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_5" pvalue="2.51e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="minus" position="60" pvalue="4.59e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_6" pvalue="5.73e-05" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="0" pvalue="2.85e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_7" pvalue="3.94e-05" num_sites="2"><scanned_site motif_id="motif_1" strand="plus" position="0" pvalue="2.28e-05"/>
<scanned_site motif_id="motif_2" strand="minus" position="15" pvalue="3.56e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_8" pvalue="5.31e-03" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="88" pvalue="6.60e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_9" pvalue="6.49e-05" num_sites="2"><scanned_site motif_id="motif_1" strand="plus" position="36" pvalue="1.70e-06"/>
<scanned_site motif_id="motif_2" strand="plus" position="78" pvalue="8.24e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_10" pvalue="5.22e-03" num_sites="1"><scanned_site motif_id="motif_2" strand="minus" position="92" pvalue="4.95e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_11" pvalue="1.95e-04" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="64" pvalue="2.77e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_12" pvalue="1.09e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="0" pvalue="8.77e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_13" pvalue="1.73e-02" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_14" pvalue="6.75e-03" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_15" pvalue="1.37e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="64" pvalue="6.12e-08"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_16" pvalue="3.14e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_17" pvalue="8.99e-02" num_sites="0"></scanned_sites>
</scanned_sites_summary>
</MEME>
