<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
<!ATTLIST training_set primary_sequences CDATA #REQUIRED primary_count CDATA #REQUIRED primary_positions CDATA #REQUIRED
  control_sequences CDATA "" control_count CDATA "" control_positions CDATA "">
<!ELEMENT alphabet (letter*)>
<!ATTLIST alphabet name CDATA #REQUIRED>
<!ELEMENT ambigs (letter*)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ATTLIST letter equals CDATA #IMPLIED>
<!ATTLIST letter aliases CDATA #IMPLIED>
<!ATTLIST letter complement CDATA #IMPLIED>
<!ATTLIST letter name CDATA #IMPLIED>
<!ATTLIST letter colour CDATA #IMPLIED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  spfun,
  min_width,
  max_width,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_positions,
  seed,
  hsfrac,
  searchsize,
  maxsize,
  norand,
  csites,
  strands,
  brief,
  psp_file,
  priors_file,
  reason_for_stopping,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT spfun (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT hsfrac (#PCDATA)*>
<!ELEMENT searchsize (#PCDATA)*>
<!ELEMENT maxsize (#PCDATA)*>
<!ELEMENT norand (#PCDATA)*>
<!ELEMENT csites (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT brief (#PCDATA)*>
<!ELEMENT psp_file (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED
		   order CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif*)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                alt CDATA ""
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                llr CDATA #REQUIRED
                p_value CDATA #REQUIRED
                e_value CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site*)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref*)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites*)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value*)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array*)>

]>
<!-- Begin document body -->
<MEME version="5.3.2" release="Fri Feb 5 17:50:07 2021 -0800">
<training_set primary_sequences="common/crp0.s" primary_count="18" primary_positions="2730" control_sequences="Primary sequences shuffled preserving 2-mers" control_count="0" control_positions="0">
<alphabet name="DNA" like="dna">
<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
<letter id="V" symbol="V" equals="ACG" name="Not T"/>
<letter id="H" symbol="H" equals="ACT" name="Not G"/>
<letter id="D" symbol="D" equals="AGT" name="Not C"/>
<letter id="B" symbol="B" equals="CGT" name="Not A"/>
<letter id="M" symbol="M" equals="AC" name="Amino"/>
<letter id="R" symbol="R" equals="AG" name="Purine"/>
<letter id="W" symbol="W" equals="AT" name="Weak"/>
<letter id="S" symbol="S" equals="CG" name="Strong"/>
<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
<letter id="K" symbol="K" equals="GT" name="Keto"/>
</alphabet>
<sequence id="sequence_0" name="ce1cg" length="105" weight="1.000000" />
<sequence id="sequence_1" name="ara" length="105" weight="1.000000" />
<sequence id="sequence_2" name="bglr1" length="105" weight="1.000000" />
<sequence id="sequence_3" name="crp" length="105" weight="1.000000" />
<sequence id="sequence_4" name="cya" length="105" weight="1.000000" />
<sequence id="sequence_5" name="deop2" length="105" weight="1.000000" />
<sequence id="sequence_6" name="gale" length="105" weight="1.000000" />
<sequence id="sequence_7" name="ilv" length="105" weight="1.000000" />
<sequence id="sequence_8" name="lac" length="105" weight="1.000000" />
<sequence id="sequence_9" name="male" length="105" weight="1.000000" />
<sequence id="sequence_10" name="malk" length="105" weight="1.000000" />
<sequence id="sequence_11" name="malt" length="105" weight="1.000000" />
<sequence id="sequence_12" name="ompa" length="105" weight="1.000000" />
<sequence id="sequence_13" name="tnaa" length="105" weight="1.000000" />
<sequence id="sequence_14" name="uxu1" length="105" weight="1.000000" />
<sequence id="sequence_15" name="pbr322" length="105" weight="1.000000" />
<sequence id="sequence_16" name="trn9cat" length="105" weight="1.000000" />
<sequence id="sequence_17" name="tdc" length="105" weight="1.000000" />
<letter_frequencies>
<alphabet_array>
<value letter_id="A">0.307</value>
<value letter_id="C">0.193</value>
<value letter_id="G">0.193</value>
<value letter_id="T">0.307</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme -minsites 3 -maxsites 17 common/crp0.s -oc results/meme43 -mod anr -dna -revcomp -nmotifs 2 -objfun nz -w 12 -hsfrac 0.5 -shuf 2 -nostatus -mpi </command_line>
<host>Timothys-Mac-Mini.local</host>
<type>anr</type>
<nmotifs>2</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>Noise-injected mHG</object_function>
<spfun>log likelihood ratio (LLR)</spfun>
<min_width>12</min_width>
<max_width>12</max_width>
<substring>yes</substring>
<minsites>3</minsites>
<maxsites>17</maxsites>
<wnsites>0.8</wnsites>
<spmap>uni</spmap>
<spfuzz>0.5</spfuzz>
<prior>dirichlet</prior>
<beta>0.01</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_positions>2730</num_positions>
<seed>0</seed>
<hsfrac>0.5</hsfrac>
<searchsize>1890</searchsize>
<maxsize>0</maxsize>
<norand>no</norand>
<strands>both</strands>
<brief>1000</brief>
<psp_file></psp_file>
<priors_file></priors_file>
<reason_for_stopping>Stopped because requested number of motifs (2) found.</reason_for_stopping>
<background_frequencies source="--sequences--" order="0">
<alphabet_array>
<value letter_id="A">0.304</value>
<value letter_id="C">0.196</value>
<value letter_id="G">0.196</value>
<value letter_id="T">0.304</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="AKTGTGATBYGB" alt="MEME-1" width="12" sites="15" ic="13.0" re="13.0" llr="136" p_value="8.1e-001" e_value="1.4e+000" bayes_threshold="8.08695" elapsed_time="0.210189">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">127</value>
<value letter_id="C">-1055</value>
<value letter_id="G">-155</value>
<value letter_id="T">-60</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-119</value>
<value letter_id="C">-1055</value>
<value letter_id="G">77</value>
<value letter_id="T">81</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1055</value>
<value letter_id="C">-1055</value>
<value letter_id="G">-1055</value>
<value letter_id="T">172</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1055</value>
<value letter_id="C">-1055</value>
<value letter_id="G">235</value>
<value letter_id="T">-1055</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1055</value>
<value letter_id="C">-155</value>
<value letter_id="G">-55</value>
<value letter_id="T">139</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1055</value>
<value letter_id="C">-1055</value>
<value letter_id="G">203</value>
<value letter_id="T">-60</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">162</value>
<value letter_id="C">-1055</value>
<value letter_id="G">-1055</value>
<value letter_id="T">-219</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-219</value>
<value letter_id="C">44</value>
<value letter_id="G">-1055</value>
<value letter_id="T">113</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-219</value>
<value letter_id="C">77</value>
<value letter_id="G">103</value>
<value letter_id="T">-60</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1055</value>
<value letter_id="C">77</value>
<value letter_id="G">-1055</value>
<value letter_id="T">113</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1055</value>
<value letter_id="C">44</value>
<value letter_id="G">190</value>
<value letter_id="T">-1055</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-219</value>
<value letter_id="C">44</value>
<value letter_id="G">77</value>
<value letter_id="T">13</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.733333</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.066667</value>
<value letter_id="T">0.200000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.133333</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.333333</value>
<value letter_id="T">0.533333</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.066667</value>
<value letter_id="G">0.133333</value>
<value letter_id="T">0.800000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.800000</value>
<value letter_id="T">0.200000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.933333</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.066667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.066667</value>
<value letter_id="C">0.266667</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.066667</value>
<value letter_id="C">0.333333</value>
<value letter_id="G">0.400000</value>
<value letter_id="T">0.200000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.333333</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.266667</value>
<value letter_id="G">0.733333</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.066667</value>
<value letter_id="C">0.266667</value>
<value letter_id="G">0.333333</value>
<value letter_id="T">0.333333</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[AT][TG]TGT[GT]A[TC][GCT][TC][GC][GTC]
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_5" position="60" strand="plus" pvalue="7.81e-07" >
<left_flank>GATTTCCTTA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>ATCGAAGTGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_1" position="63" strand="minus" pvalue="7.10e-06" >
<left_flank>GGCATAGCAA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>TGCAAATAAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="17" strand="plus" pvalue="7.87e-06" >
<left_flank>GAGTGAAATT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>TTAACCCAAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="88" strand="minus" pvalue="1.74e-05" >
<left_flank>GTGAA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>TCACAATTCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_6" position="50" strand="minus" pvalue="2.13e-05" >
<left_flank>AGATGCGAAA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>AATAAATTAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_5" position="77" strand="plus" pvalue="2.32e-05" >
<left_flank>TGTGTATCGA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>AGTAGATGTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_2" position="21" strand="plus" pvalue="2.54e-05" >
<left_flank>TAACTTAATT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TATATATAAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_2" position="0" strand="minus" pvalue="2.54e-05" >
<left_flank>TAATTAAGTT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="22" strand="minus" pvalue="2.80e-05" >
<left_flank>ACCGTCGCTT</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>GTTACAGAAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_3" position="71" strand="minus" pvalue="3.31e-05" >
<left_flank>ACTGCACGGT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>TTTGCATACA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_13" position="71" strand="plus" pvalue="4.22e-05" >
<left_flank>TCCCCGAACG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TTCACATTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_5" position="15" strand="minus" pvalue="4.61e-05" >
<left_flank>GCATCACTGT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>TTCAAATAAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="15" strand="plus" pvalue="5.02e-05" >
<left_flank>GGCGGGGTTT</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>AATTCAGTAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_12" position="56" strand="minus" pvalue="5.89e-05" >
<left_flank>AAAACTTACA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>GTCAGGCATA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_1" position="7" strand="minus" pvalue="9.53e-05" >
<left_flank>TATAGACACT</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TTTTGTC</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_2" name="AAAAAACGKCWT" alt="MEME-2" width="12" sites="8" ic="15.6" re="14.6" llr="81" p_value="9.6e-001" e_value="2.2e+000" bayes_threshold="7.71768" elapsed_time="0.397970">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">152</value>
<value letter_id="C">-65</value>
<value letter_id="G">-965</value>
<value letter_id="T">-965</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">104</value>
<value letter_id="C">-65</value>
<value letter_id="G">-65</value>
<value letter_id="T">-128</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">172</value>
<value letter_id="C">-965</value>
<value letter_id="G">-965</value>
<value letter_id="T">-965</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">172</value>
<value letter_id="C">-965</value>
<value letter_id="G">-965</value>
<value letter_id="T">-965</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">130</value>
<value letter_id="C">-65</value>
<value letter_id="G">-965</value>
<value letter_id="T">-128</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">152</value>
<value letter_id="C">-65</value>
<value letter_id="G">-965</value>
<value letter_id="T">-965</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-28</value>
<value letter_id="C">194</value>
<value letter_id="G">-965</value>
<value letter_id="T">-965</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-965</value>
<value letter_id="C">-65</value>
<value letter_id="G">216</value>
<value letter_id="T">-965</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-965</value>
<value letter_id="C">-965</value>
<value letter_id="G">94</value>
<value letter_id="T">104</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-965</value>
<value letter_id="C">194</value>
<value letter_id="G">35</value>
<value letter_id="T">-965</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">72</value>
<value letter_id="C">-965</value>
<value letter_id="G">-965</value>
<value letter_id="T">72</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-128</value>
<value letter_id="C">-965</value>
<value letter_id="G">-965</value>
<value letter_id="T">152</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.875000</value>
<value letter_id="C">0.125000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.625000</value>
<value letter_id="C">0.125000</value>
<value letter_id="G">0.125000</value>
<value letter_id="T">0.125000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.750000</value>
<value letter_id="C">0.125000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.125000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.875000</value>
<value letter_id="C">0.125000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.250000</value>
<value letter_id="C">0.750000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.125000</value>
<value letter_id="G">0.875000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.375000</value>
<value letter_id="T">0.625000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.750000</value>
<value letter_id="G">0.250000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.500000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.125000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.875000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
AAAAAA[CA]G[TG][CG][AT]T
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_11" position="71" strand="plus" pvalue="3.34e-07" >
<left_flank>CAGACACATA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>CGCTTGCATT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_12" position="31" strand="minus" pvalue="3.11e-06" >
<left_flank>AGGCATATGA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>GTATAAGGTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_6" position="6" strand="plus" pvalue="5.92e-06" >
<left_flank>GCGCAT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AATTCTTGTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="35" strand="plus" pvalue="6.35e-06" >
<left_flank>GCAATTCAGT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>CAACCCCTCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_10" position="18" strand="plus" pvalue="9.33e-06" >
<left_flank>CGGGAGGATG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>CTGTGAACTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_0" position="52" strand="minus" pvalue="1.61e-05" >
<left_flank>AAACGATCAA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TCACACCACG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="84" strand="plus" pvalue="2.94e-05" >
<left_flank>GCGTAAGGAG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>CAGGCGCTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_4" position="62" strand="minus" pvalue="3.72e-05" >
<left_flank>AAAAAATGGT</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>CAATTTAACA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
</motifs>
<scanned_sites_summary p_thresh="0.0001">
<scanned_sites sequence_id="sequence_0" pvalue="1.05e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="minus" position="52" pvalue="1.61e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_1" pvalue="1.92e-03" num_sites="2"><scanned_site motif_id="motif_1" strand="minus" position="7" pvalue="9.53e-05"/>
<scanned_site motif_id="motif_1" strand="minus" position="63" pvalue="7.10e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_2" pvalue="1.94e-02" num_sites="2"><scanned_site motif_id="motif_1" strand="minus" position="0" pvalue="2.54e-05"/>
<scanned_site motif_id="motif_1" strand="plus" position="21" pvalue="2.54e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_3" pvalue="2.63e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="71" pvalue="3.31e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_4" pvalue="2.88e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="minus" position="62" pvalue="3.72e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_5" pvalue="1.30e-03" num_sites="3"><scanned_site motif_id="motif_1" strand="minus" position="15" pvalue="4.61e-05"/>
<scanned_site motif_id="motif_1" strand="plus" position="60" pvalue="7.81e-07"/>
<scanned_site motif_id="motif_1" strand="plus" position="77" pvalue="2.32e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_6" pvalue="5.92e-05" num_sites="2"><scanned_site motif_id="motif_2" strand="plus" position="6" pvalue="5.92e-06"/>
<scanned_site motif_id="motif_1" strand="minus" position="50" pvalue="2.13e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_7" pvalue="1.39e-04" num_sites="2"><scanned_site motif_id="motif_1" strand="plus" position="15" pvalue="5.02e-05"/>
<scanned_site motif_id="motif_2" strand="plus" position="35" pvalue="6.35e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_8" pvalue="2.06e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="88" pvalue="1.74e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_9" pvalue="2.88e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="22" pvalue="2.80e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_10" pvalue="7.84e-03" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="18" pvalue="9.33e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_11" pvalue="1.98e-04" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="71" pvalue="3.34e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_12" pvalue="8.34e-05" num_sites="2"><scanned_site motif_id="motif_2" strand="minus" position="31" pvalue="3.11e-06"/>
<scanned_site motif_id="motif_1" strand="minus" position="56" pvalue="5.89e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_13" pvalue="2.60e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="71" pvalue="4.22e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_14" pvalue="2.04e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="17" pvalue="7.87e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_15" pvalue="2.43e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="84" pvalue="2.94e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_16" pvalue="8.83e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_17" pvalue="7.51e-01" num_sites="0"></scanned_sites>
</scanned_sites_summary>
</MEME>
