<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<mast version="5.3.2" release="Fri Feb 5 17:50:07 2021 -0800">
	<command_line><arg>mast</arg><arg>-oc</arg><arg>results/mast2</arg><arg>-nostatus</arg><arg>/Users/t.bailey/meme_git/meme/tests/meme/meme.crp0.classic.zoops.xml</arg><arg>common/crp0.s</arg></command_line>
	<settings strand_handling="combine" max_correlation="0.60" remove_correlated="n" max_seq_evalue="10" adjust_hit="n" max_hit_pvalue="0.0001" max_weak_pvalue="0.0001"/>
	<alphabet name="DNA" like="dna">
		<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
		<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
		<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
		<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
		<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
		<letter id="V" symbol="V" equals="ACG" name="Not T"/>
		<letter id="H" symbol="H" equals="ACT" name="Not G"/>
		<letter id="D" symbol="D" equals="AGT" name="Not C"/>
		<letter id="B" symbol="B" equals="CGT" name="Not A"/>
		<letter id="M" symbol="M" equals="AC" name="Amino"/>
		<letter id="R" symbol="R" equals="AG" name="Purine"/>
		<letter id="W" symbol="W" equals="AT" name="Weak"/>
		<letter id="S" symbol="S" equals="CG" name="Strong"/>
		<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
		<letter id="K" symbol="K" equals="GT" name="Keto"/>
	</alphabet>
	<background source="--nrdb--" A="0.274262" C="0.22521" G="0.22521" T="0.274262"/>
	<motif_dbs>
		<motif_db source="/Users/t.bailey/meme_git/meme/tests/meme/meme.crp0.classic.zoops.xml" last_mod_date="Sat Jan 30 16:47:30 2021">
			<background A="0.304" C="0.196" G="0.196" T="0.304"/>
		</motif_db>
	</motif_dbs>
	<motifs>
		<motif db="0" id="AWDTGTGANVTNGNTCACA" alt="MEME-1" length="19" nsites="17" evalue="1.8e-007">
			<pos A="121" C="-1073" G="-1073" T="-5"/>
			<pos A="80" C="-1073" G="-73" T="21"/>
			<pos A="-37" C="-73" G="59" T="21"/>
			<pos A="-237" C="-173" G="-1073" T="154"/>
			<pos A="-1073" C="-1073" G="235" T="-1073"/>
			<pos A="-137" C="-1073" G="-1073" T="154"/>
			<pos A="-1073" C="-1073" G="226" T="-237"/>
			<pos A="144" C="-73" G="-173" T="-1073"/>
			<pos A="-37" C="26" G="59" T="-37"/>
			<pos A="-37" C="26" G="126" T="-237"/>
			<pos A="-137" C="26" G="-1073" T="109"/>
			<pos A="-78" C="85" G="-15" T="-5"/>
			<pos A="-78" C="-73" G="143" T="-78"/>
			<pos A="21" C="-15" G="-15" T="-5"/>
			<pos A="-1073" C="-1073" G="-73" T="154"/>
			<pos A="-237" C="196" G="-1073" T="-78"/>
			<pos A="133" C="-1073" G="26" T="-1073"/>
			<pos A="-37" C="159" G="-73" T="-237"/>
			<pos A="121" C="-73" G="-15" T="-1073"/>
		</motif>
		<motif db="0" id="ASGRGSMRGRAGSAT" alt="MEME-2" length="15" nsites="3" evalue="2.5e+004">
			<pos A="171" C="-823" G="-823" T="-823"/>
			<pos A="-823" C="77" G="176" T="-823"/>
			<pos A="-823" C="-823" G="235" T="-823"/>
			<pos A="113" C="-823" G="77" T="-823"/>
			<pos A="-823" C="-823" G="235" T="-823"/>
			<pos A="-823" C="176" G="77" T="-823"/>
			<pos A="13" C="176" G="-823" T="-823"/>
			<pos A="13" C="-823" G="176" T="-823"/>
			<pos A="-823" C="-823" G="235" T="-823"/>
			<pos A="13" C="-823" G="176" T="-823"/>
			<pos A="171" C="-823" G="-823" T="-823"/>
			<pos A="-823" C="-823" G="235" T="-823"/>
			<pos A="-823" C="77" G="176" T="-823"/>
			<pos A="171" C="-823" G="-823" T="-823"/>
			<pos A="-823" C="-823" G="-823" T="171"/>
		</motif>
	</motifs>
	<correlations>
		<correlation idx_a="0" idx_b="1" value="0.23"/>
	</correlations>
	<sequence_dbs>
		<sequence_db source="common/crp0.s" last_mod_date="Sun Mar  1 14:58:12 2020" seq_count="18" residue_count="1890"/>
	</sequence_dbs>
	<sequences>
		<sequence db="0" name="malk" comment="29 61" length="105">
			<score strand="both" combined_pvalue="2.30e-08" evalue="4.1e-07"/>
			<seg start="1">
				<data>
GGAGGAGGCGGGAGGATGAGAACACGGCTTCTGTGAACTAAACCGAGGTCATGTAAGGAATTTCGTGATGTTGCT
TGCAAAAATCGTGGCGATTTTATGTGCGCA
				</data>
				<hit pos="3" idx="1" rc="n" pvalue="2.5e-09" match="+++++++++++++++"/>
				<hit pos="61" idx="0" rc="n" pvalue="1.3e-05" match=" ++ ++++ ++ + + +++"/>
			</seg>
		</sequence>
		<sequence db="0" name="male" comment="14" length="105">
			<score strand="both" combined_pvalue="5.94e-08" evalue="1.1e-06"/>
			<seg start="1">
				<data>
ACATTACCGCCAATTCTGTAACAGAGATCACACAAAGCGACGGTGGGGCGTAGGGGCAAGGAGGATGGAAAGAGG
				</data>
				<hit pos="17" idx="0" rc="y" pvalue="2.9e-06" match="+++ +  +++ +++++++ "/>
				<hit pos="52" idx="1" rc="n" pvalue="3.1e-08" match="+++++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="lac" comment="9 80" length="105">
			<score strand="both" combined_pvalue="9.20e-08" evalue="1.7e-06"/>
			<seg start="1">
				<data>
AACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTG
				</data>
				<hit pos="12" idx="0" rc="y" pvalue="4.6e-06" match="+++++   +++++++ +++"/>
				<hit pos="55" idx="1" rc="y" pvalue="3.1e-08" match="+++++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="ara" comment="17 55" length="105">
			<score strand="both" combined_pvalue="3.04e-04" evalue="0.0055"/>
			<seg start="1">
				<data>
GACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCAGAAAAGTCCACATTGATTATTTGCACGGCGTCACACT
TTGCTATGCCATAGCATTTTTATCCATAAG
				</data>
				<hit pos="58" idx="0" rc="y" pvalue="1.5e-07" match="+ ++  +++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="pbr322" comment="53" length="105">
			<score strand="both" combined_pvalue="1.45e-03" evalue="0.026"/>
			<seg start="1">
				<data>
CTGGCTTAACTATGCGGCATCAGAGCAGATTGTACTGAGAGTGCACCATATGCGGTGTGAAATACCGCACAGATG
				</data>
				<hit pos="56" idx="0" rc="y" pvalue="1.6e-06" match="+++++   +++ ++++ ++"/>
			</seg>
		</sequence>
		<sequence db="0" name="deop2" comment="7 60" length="105">
			<score strand="both" combined_pvalue="1.46e-03" evalue="0.026"/>
			<seg start="1">
				<data>
AGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATC
GAAGTGTGTTGCGGAGTAGATGTTAGAATA
				</data>
				<hit pos="60" idx="0" rc="n" pvalue="9.4e-07" match="++++++++ ++  ++++ +"/>
			</seg>
		</sequence>
		<sequence db="0" name="crp" comment="63" length="105">
			<score strand="both" combined_pvalue="2.17e-03" evalue="0.039"/>
			<seg start="1">
				<data>
CACAAAGCGAAAGCTATGCTAAAACAGTCAGGATGCTACAGTAATACATTGATGTACTGCATGTATGCAAAGGAC
GTCACATTACCGTGCAGTACAGTTGATAGC
				</data>
				<hit pos="66" idx="0" rc="y" pvalue="2.4e-06" match="+++ +  +++++++++ + "/>
			</seg>
		</sequence>
		<sequence db="0" name="ompa" comment="48" length="105">
			<score strand="both" combined_pvalue="2.29e-03" evalue="0.041"/>
			<seg start="1">
				<data>
GCTGACAAAAAAGATTAAACATACCTTATACAAGACTTTTTTTTCATATGCCTGACGGAGTTCACACTTGTAAGT
				</data>
				<hit pos="51" idx="0" rc="y" pvalue="1.6e-06" match="  +++  +++ ++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="ilv" comment="39" length="105">
			<score strand="both" combined_pvalue="3.05e-03" evalue="0.055"/>
			<seg start="1">
				<data>
GCTCCGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAAACGTGATCAACCCCTCAATTTTCCCTTTGCTGAAA
				</data>
				<hit pos="42" idx="0" rc="y" pvalue="2.0e-06" match=" ++++++ +++ + +++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="tnaa" comment="71 " length="105">
			<score strand="both" combined_pvalue="3.23e-03" evalue="0.058"/>
			<seg start="1">
				<data>
TTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTG
TGATTCGATTCACATTTAAACAATTTCAGA
				</data>
				<hit pos="74" idx="0" rc="y" pvalue="4.6e-06" match="++++++  +  +++++ ++"/>
			</seg>
		</sequence>
		<sequence db="0" name="tdc" comment="78" length="105">
			<score strand="both" combined_pvalue="3.61e-03" evalue="0.065"/>
			<seg start="76">
				<data>
TAATTTGTGAGTGGTCGCACATATCCTGTT
				</data>
				<hit pos="81" idx="0" rc="y" pvalue="2.4e-06" match="+++++  ++ + ++++ ++"/>
			</seg>
		</sequence>
		<sequence db="0" name="ce1cg" comment="17 61" length="105">
			<score strand="both" combined_pvalue="4.24e-03" evalue="0.076"/>
			<seg start="1">
				<data>
TAATGTTTGTGCTGGTTTTTGTGGCATCGGGCGAGAATAGCGCGTGGTGTGAAAGACTGTTTTTTTGATCGTTTT
CACAAAAATGGAAGTCCACAGTCTTGACAG
				</data>
				<hit pos="17" idx="0" rc="n" pvalue="5.8e-05" match=" ++++++ + +++  ++  "/>
				<hit pos="64" idx="0" rc="y" pvalue="2.9e-06" match="+ ++++++   +++++++ "/>
			</seg>
		</sequence>
		<sequence db="0" name="bglr1" comment="76" length="105">
			<score strand="both" combined_pvalue="4.52e-03" evalue="0.081"/>
			<seg start="76">
				<data>
AACTGTGAGCATGGTCATATTTTTATCAAT
				</data>
				<hit pos="76" idx="0" rc="n" pvalue="5.5e-06" match="++ +++++++  + +++ +"/>
			</seg>
		</sequence>
		<sequence db="0" name="cya" comment="50" length="105">
			<score strand="both" combined_pvalue="5.28e-03" evalue="0.095"/>
			<seg start="1">
				<data>
ACGGTGCTACACTTGTATGTAGCGCATCTTTCTTTACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGA
				</data>
				<hit pos="50" idx="0" rc="n" pvalue="1.1e-05" match="+ ++++ +  + ++++++ "/>
			</seg>
		</sequence>
		<sequence db="0" name="malt" comment="41" length="105">
			<score strand="both" combined_pvalue="5.51e-03" evalue="0.099"/>
			<seg start="1">
				<data>
GATCAGCGTCGTTTTAGGTGAGTTGTTAATAAAGATTTGGAATTGTGACACAGTGCAAATTCAGACACATAAAAA
				</data>
				<hit pos="41" idx="0" rc="n" pvalue="3.8e-06" match="+++++++++ + +  ++ +"/>
			</seg>
		</sequence>
		<sequence db="0" name="trn9cat" comment="1 84" length="105">
			<score strand="both" combined_pvalue="5.83e-03" evalue="0.1"/>
			<seg start="76">
				<data>
TTTGGCGAAAATGAGACGTTGATCGGCACG
				</data>
				<hit pos="84" idx="0" rc="n" pvalue="7.7e-06" match="++ ++ +++++ +++++  "/>
			</seg>
		</sequence>
		<sequence db="0" name="uxu1" comment="17" length="105">
			<score strand="both" combined_pvalue="1.85e-02" evalue="0.33"/>
			<seg start="1">
				<data>
CCCATGAGAGTGAAATTGTTGTGATGTGGTTAACCCAATTAGAATTCGGGATTGACATGTCTTACCAAAAGGTAG
				</data>
				<hit pos="17" idx="0" rc="n" pvalue="1.6e-05" match="  ++++++ ++ + + ++ "/>
			</seg>
		</sequence>
		<sequence db="0" name="gale" comment="42" length="105">
			<score strand="both" combined_pvalue="4.35e-02" evalue="0.78"/>
			<seg start="1">
				<data>
GCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCATGTCACACTTTTCGCATCTTTG
				</data>
				<hit pos="27" idx="0" rc="y" pvalue="4.3e-05" match="+++ + +++   +++ +++"/>
			</seg>
		</sequence>
	</sequences>
	<runtime host="Timothys-Mac-Mini.local" when="Fri Feb  5 18:54:29 2021" cycles="9422" seconds="0.009"/>
</mast>
