&test(
  'clustalw2fasta1', '',
  'clustalw2fasta', '',
  ['common/test.aln'],
  [
    {
      output => '-', 
      reference => make_test_src_path('clustalw2fasta/test.fasta'),
      type => 'text'
    }
  ],
  'results/clustalw2fasta1'
);

&test(
  'clustalw2fasta2', 
  '',
  'clustalw2fasta', 
  '',
  [
    '-nogap', 
    'common/test.aln'
  ],
  [
    {
      output => '-',
      reference => make_test_src_path('clustalw2fasta/test.nogap.fasta'),
      type => 'text'
    }
  ],
  'results/clustalw2fasta2'
);

&test(
  'clustalw2fasta3', '',
  'clustalw2fasta', '',
  [
    '-consensus', 100, 
    'common/test.aln'
  ],
  [
    {
      output => '-',
      type => 'text', 
      reference => make_test_src_path('clustalw2fasta/test.consensus.fasta')
    }
  ], 
  'results/clustalw2fasta3'
);
