<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
<!ATTLIST training_set primary_sequences CDATA #REQUIRED primary_count CDATA #REQUIRED primary_positions CDATA #REQUIRED
  control_sequences CDATA "" control_count CDATA "" control_positions CDATA "">
<!ELEMENT alphabet (letter*)>
<!ATTLIST alphabet name CDATA #REQUIRED>
<!ELEMENT ambigs (letter*)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ATTLIST letter equals CDATA #IMPLIED>
<!ATTLIST letter aliases CDATA #IMPLIED>
<!ATTLIST letter complement CDATA #IMPLIED>
<!ATTLIST letter name CDATA #IMPLIED>
<!ATTLIST letter colour CDATA #IMPLIED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  spfun,
  min_width,
  max_width,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_positions,
  seed,
  hsfrac,
  searchsize,
  maxsize,
  norand,
  csites,
  strands,
  brief,
  psp_file,
  priors_file,
  reason_for_stopping,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT spfun (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT hsfrac (#PCDATA)*>
<!ELEMENT searchsize (#PCDATA)*>
<!ELEMENT maxsize (#PCDATA)*>
<!ELEMENT norand (#PCDATA)*>
<!ELEMENT csites (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT brief (#PCDATA)*>
<!ELEMENT psp_file (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED
		   order CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif*)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                alt CDATA ""
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                llr CDATA #REQUIRED
                p_value CDATA #REQUIRED
                e_value CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site*)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref*)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites*)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value*)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array*)>

]>
<!-- Begin document body -->
<MEME version="5.3.2" release="Fri Feb 5 17:50:07 2021 -0800">
<training_set primary_sequences="common/crp0.s" primary_count="18" primary_positions="1890" control_sequences="Primary sequences shuffled preserving 3-mers" control_count="18" control_positions="1890">
<alphabet name="DNA" like="dna">
<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
<letter id="V" symbol="V" equals="ACG" name="Not T"/>
<letter id="H" symbol="H" equals="ACT" name="Not G"/>
<letter id="D" symbol="D" equals="AGT" name="Not C"/>
<letter id="B" symbol="B" equals="CGT" name="Not A"/>
<letter id="M" symbol="M" equals="AC" name="Amino"/>
<letter id="R" symbol="R" equals="AG" name="Purine"/>
<letter id="W" symbol="W" equals="AT" name="Weak"/>
<letter id="S" symbol="S" equals="CG" name="Strong"/>
<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
<letter id="K" symbol="K" equals="GT" name="Keto"/>
</alphabet>
<sequence id="sequence_0" name="ce1cg" length="105" weight="1.000000" />
<sequence id="sequence_1" name="ara" length="105" weight="1.000000" />
<sequence id="sequence_2" name="bglr1" length="105" weight="1.000000" />
<sequence id="sequence_3" name="crp" length="105" weight="1.000000" />
<sequence id="sequence_4" name="cya" length="105" weight="1.000000" />
<sequence id="sequence_5" name="deop2" length="105" weight="1.000000" />
<sequence id="sequence_6" name="gale" length="105" weight="1.000000" />
<sequence id="sequence_7" name="ilv" length="105" weight="1.000000" />
<sequence id="sequence_8" name="lac" length="105" weight="1.000000" />
<sequence id="sequence_9" name="male" length="105" weight="1.000000" />
<sequence id="sequence_10" name="malk" length="105" weight="1.000000" />
<sequence id="sequence_11" name="malt" length="105" weight="1.000000" />
<sequence id="sequence_12" name="ompa" length="105" weight="1.000000" />
<sequence id="sequence_13" name="tnaa" length="105" weight="1.000000" />
<sequence id="sequence_14" name="uxu1" length="105" weight="1.000000" />
<sequence id="sequence_15" name="pbr322" length="105" weight="1.000000" />
<sequence id="sequence_16" name="trn9cat" length="105" weight="1.000000" />
<sequence id="sequence_17" name="tdc" length="105" weight="1.000000" />
<letter_frequencies>
<alphabet_array>
<value letter_id="A">0.304</value>
<value letter_id="C">0.196</value>
<value letter_id="G">0.196</value>
<value letter_id="T">0.304</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme -minsites 3 -maxsites 17 common/crp0.s -oc results/meme21 -mod anr -dna -revcomp -nmotifs 2 -objfun de -w 12 -hsfrac 0.6 -shuf 3 -nostatus -mpi </command_line>
<host>Timothys-Mac-Mini.local</host>
<type>anr</type>
<nmotifs>2</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>Differential Enrichment mHG</object_function>
<spfun>log likelihood ratio (LLR)</spfun>
<min_width>12</min_width>
<max_width>12</max_width>
<substring>yes</substring>
<minsites>3</minsites>
<maxsites>17</maxsites>
<wnsites>0.8</wnsites>
<spmap>uni</spmap>
<spfuzz>0.5</spfuzz>
<prior>dirichlet</prior>
<beta>0.01</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_positions>1890</num_positions>
<seed>0</seed>
<hsfrac>0.6</hsfrac>
<searchsize>1890</searchsize>
<maxsize>0</maxsize>
<norand>no</norand>
<strands>both</strands>
<brief>1000</brief>
<psp_file></psp_file>
<priors_file></priors_file>
<reason_for_stopping>Stopped because requested number of motifs (2) found.</reason_for_stopping>
<background_frequencies source="--sequences--" order="0">
<alphabet_array>
<value letter_id="A">0.304</value>
<value letter_id="C">0.196</value>
<value letter_id="G">0.196</value>
<value letter_id="T">0.304</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="HCAVMTCACAWW" alt="MEME-1" width="12" sites="17" ic="11.4" re="11.4" llr="134" p_value="6.6e-001" e_value="6.6e-001" bayes_threshold="7.30945" elapsed_time="0.196740">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">63</value>
<value letter_id="C">59</value>
<value letter_id="G">-1073</value>
<value letter_id="T">-37</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1073</value>
<value letter_id="C">207</value>
<value letter_id="G">-173</value>
<value letter_id="T">-137</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">121</value>
<value letter_id="C">-73</value>
<value letter_id="G">-15</value>
<value letter_id="T">-1073</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">21</value>
<value letter_id="C">107</value>
<value letter_id="G">26</value>
<value letter_id="T">-1073</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">109</value>
<value letter_id="C">85</value>
<value letter_id="G">-1073</value>
<value letter_id="T">-1073</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-237</value>
<value letter_id="C">-15</value>
<value letter_id="G">-73</value>
<value letter_id="T">109</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-237</value>
<value letter_id="C">226</value>
<value letter_id="G">-1073</value>
<value letter_id="T">-1073</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">133</value>
<value letter_id="C">-73</value>
<value letter_id="G">-73</value>
<value letter_id="T">-1073</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1073</value>
<value letter_id="C">226</value>
<value letter_id="G">-173</value>
<value letter_id="T">-1073</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">154</value>
<value letter_id="C">-73</value>
<value letter_id="G">-1073</value>
<value letter_id="T">-1073</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">44</value>
<value letter_id="C">-73</value>
<value letter_id="G">-73</value>
<value letter_id="T">21</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">21</value>
<value letter_id="C">-173</value>
<value letter_id="G">-1073</value>
<value letter_id="T">95</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.470588</value>
<value letter_id="C">0.294118</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.235294</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.823529</value>
<value letter_id="G">0.058824</value>
<value letter_id="T">0.117647</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.705882</value>
<value letter_id="C">0.117647</value>
<value letter_id="G">0.176471</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.352941</value>
<value letter_id="C">0.411765</value>
<value letter_id="G">0.235294</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.647059</value>
<value letter_id="C">0.352941</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.058824</value>
<value letter_id="C">0.176471</value>
<value letter_id="G">0.117647</value>
<value letter_id="T">0.647059</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.058824</value>
<value letter_id="C">0.941176</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.764706</value>
<value letter_id="C">0.117647</value>
<value letter_id="G">0.117647</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.941176</value>
<value letter_id="G">0.058824</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.882353</value>
<value letter_id="C">0.117647</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.411765</value>
<value letter_id="C">0.117647</value>
<value letter_id="G">0.117647</value>
<value letter_id="T">0.352941</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.352941</value>
<value letter_id="C">0.058824</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.588235</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[ACT]CA[CAG][AC]TCACA[AT][TA]
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_5" position="60" strand="minus" pvalue="1.77e-07" >
<left_flank>ACACTTCGAT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TAAGGAAATC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="17" strand="minus" pvalue="1.52e-05" >
<left_flank>ATTGGGTTAA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>AATTTCACTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_2" position="21" strand="minus" pvalue="2.04e-05" >
<left_flank>GTTATATATA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>AATTAAGTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_2" position="0" strand="plus" pvalue="2.04e-05" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>AACTTAATTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_5" position="15" strand="plus" pvalue="2.32e-05" >
<left_flank>ATTATTTGAA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>ACAGTGATGC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_13" position="71" strand="minus" pvalue="2.66e-05" >
<left_flank>TAAATGTGAA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>CGTTCGGGGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_17" position="78" strand="minus" pvalue="4.33e-05" >
<left_flank>GATATGTGCG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TTAACTTTCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="81" strand="minus" pvalue="4.33e-05" >
<left_flank>GAAATTGTTA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TCCACACAAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_11" position="14" strand="minus" pvalue="6.45e-05" >
<left_flank>ATCTTTATTA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AAACGACGCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="9" strand="minus" pvalue="9.21e-05" >
<left_flank>AATGAGTGAG</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>AATTGCGTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="48" strand="minus" pvalue="1.18e-04" >
<left_flank>GTGCGGTATT</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TGGTGCACTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_5" position="77" strand="minus" pvalue="1.89e-04" >
<left_flank>AACATCTACT</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>TCGATACACA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="39" strand="minus" pvalue="2.18e-04" >
<left_flank>CCTTGCCCCT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>CGCTTTGTGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="22" strand="plus" pvalue="2.50e-04" >
<left_flank>ATTCTGTAAC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AAGCGACGGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="68" strand="minus" pvalue="3.10e-04" >
<left_flank>GCTCACAATT</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>CGAGCCGGAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="61" strand="plus" pvalue="3.99e-04" >
<left_flank>GCGGTGTGAA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TGCGTAAGGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="19" strand="plus" pvalue="4.53e-04" >
<left_flank>CTATGCGGCA</left_flank>
<site>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
</site>
<right_flank>GTACTGAGAG</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_2" name="ATMAMSAWRYTM" alt="MEME-2" width="12" sites="6" ic="16.2" re="15.0" llr="62" p_value="4.9e-001" e_value="4.9e-001" bayes_threshold="8.58325" elapsed_time="0.359424">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">172</value>
<value letter_id="C">-923</value>
<value letter_id="G">-923</value>
<value letter_id="T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-923</value>
<value letter_id="C">-923</value>
<value letter_id="G">-923</value>
<value letter_id="T">172</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">72</value>
<value letter_id="C">77</value>
<value letter_id="G">-23</value>
<value letter_id="T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">172</value>
<value letter_id="C">-923</value>
<value letter_id="G">-923</value>
<value letter_id="T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">72</value>
<value letter_id="C">135</value>
<value letter_id="G">-923</value>
<value letter_id="T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-87</value>
<value letter_id="C">77</value>
<value letter_id="G">135</value>
<value letter_id="T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">172</value>
<value letter_id="C">-923</value>
<value letter_id="G">-923</value>
<value letter_id="T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">72</value>
<value letter_id="C">-923</value>
<value letter_id="G">-923</value>
<value letter_id="T">72</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">72</value>
<value letter_id="C">-923</value>
<value letter_id="G">135</value>
<value letter_id="T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-923</value>
<value letter_id="C">177</value>
<value letter_id="G">-923</value>
<value letter_id="T">13</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-923</value>
<value letter_id="C">-923</value>
<value letter_id="G">-923</value>
<value letter_id="T">172</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">72</value>
<value letter_id="C">135</value>
<value letter_id="G">-923</value>
<value letter_id="T">-923</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.500000</value>
<value letter_id="C">0.333333</value>
<value letter_id="G">0.166667</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.500000</value>
<value letter_id="C">0.500000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.166667</value>
<value letter_id="C">0.333333</value>
<value letter_id="G">0.500000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.500000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.500000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.500000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.666667</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.333333</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.500000</value>
<value letter_id="C">0.500000</value>
<value letter_id="G">0.000000</value>
<value letter_id="T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
AT[AC]A[AC][GC]A[AT][AG][CT]T[AC]
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_17" position="46" strand="plus" pvalue="1.52e-06" >
<left_flank>TTTAATTGTA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>TGGAAAGTAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_2" position="81" strand="minus" pvalue="4.41e-06" >
<left_flank>TGATAAAAAT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>ACAGTTATTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="82" strand="plus" pvalue="7.68e-06" >
<left_flank>AGGTTGCCGT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GAGTCCGTTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_10" position="57" strand="minus" pvalue="1.01e-05" >
<left_flank>TGCAAGCAAC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>CTTACATGAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_17" position="13" strand="minus" pvalue="2.22e-05" >
<left_flank>ACCTTTAAAT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AAGTATAAAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_1" position="86" strand="minus" pvalue="2.58e-05" >
<left_flank>CTTATGG</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="T"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TGGCATAGCA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
</motifs>
<scanned_sites_summary p_thresh="0.0001">
<scanned_sites sequence_id="sequence_0" pvalue="7.25e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_1" pvalue="1.54e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="minus" position="86" pvalue="2.58e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_2" pvalue="4.34e-05" num_sites="3"><scanned_site motif_id="motif_1" strand="plus" position="0" pvalue="2.04e-05"/>
<scanned_site motif_id="motif_1" strand="minus" position="21" pvalue="2.04e-05"/>
<scanned_site motif_id="motif_2" strand="minus" position="81" pvalue="4.41e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_3" pvalue="3.95e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_4" pvalue="5.40e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_5" pvalue="2.75e-04" num_sites="2"><scanned_site motif_id="motif_1" strand="plus" position="15" pvalue="2.32e-05"/>
<scanned_site motif_id="motif_1" strand="minus" position="60" pvalue="1.77e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_6" pvalue="3.62e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_7" pvalue="6.56e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_8" pvalue="3.34e-02" num_sites="2"><scanned_site motif_id="motif_1" strand="minus" position="9" pvalue="9.21e-05"/>
<scanned_site motif_id="motif_1" strand="minus" position="81" pvalue="4.33e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_9" pvalue="6.23e-04" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="82" pvalue="7.68e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_10" pvalue="1.00e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="minus" position="57" pvalue="1.01e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_11" pvalue="4.08e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="14" pvalue="6.45e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_12" pvalue="5.32e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_13" pvalue="1.69e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="71" pvalue="2.66e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_14" pvalue="1.30e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="minus" position="17" pvalue="1.52e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_15" pvalue="1.04e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_16" pvalue="6.93e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_17" pvalue="3.24e-05" num_sites="3"><scanned_site motif_id="motif_2" strand="minus" position="13" pvalue="2.22e-05"/>
<scanned_site motif_id="motif_2" strand="plus" position="46" pvalue="1.52e-06"/>
<scanned_site motif_id="motif_1" strand="minus" position="78" pvalue="4.33e-05"/>
</scanned_sites>
</scanned_sites_summary>
</MEME>
