<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<mast version="5.0.0" release="Wed Oct 11 17:39:42 2017 -0700">
	<command_line><arg>mast</arg><arg>-oc</arg><arg>results/mast8</arg><arg>-nostatus</arg><arg>meme/meme.INO_up800.classic.oops.xml</arg><arg>common/INO_up800.s</arg></command_line>
	<settings strand_handling="combine" max_correlation="0.60" remove_correlated="n" max_seq_evalue="10" adjust_hit="n" max_hit_pvalue="0.0001" max_weak_pvalue="0.0001"/>
	<alphabet name="DNA" like="dna">
		<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
		<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
		<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
		<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
		<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
		<letter id="V" symbol="V" equals="ACG" name="Not T"/>
		<letter id="H" symbol="H" equals="ACT" name="Not G"/>
		<letter id="D" symbol="D" equals="AGT" name="Not C"/>
		<letter id="B" symbol="B" equals="CGT" name="Not A"/>
		<letter id="M" symbol="M" equals="AC" name="Amino"/>
		<letter id="R" symbol="R" equals="AG" name="Purine"/>
		<letter id="W" symbol="W" equals="AT" name="Weak"/>
		<letter id="S" symbol="S" equals="CG" name="Strong"/>
		<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
		<letter id="K" symbol="K" equals="GT" name="Keto"/>
	</alphabet>
	<background source="--nrdb--" A="0.274262" C="0.22521" G="0.22521" T="0.274262"/>
	<motif_dbs>
		<motif_db source="meme/meme.INO_up800.classic.oops.xml" last_mod_date="Fri Oct 20 16:23:15 2017">
			<background A="0.324" C="0.176" G="0.176" T="0.324"/>
		</motif_db>
	</motif_dbs>
	<motifs>
		<motif db="0" id="GSKGCATGTGAAA" alt="MEME-1" length="13" nsites="7" evalue="1.9e-001">
			<pos A="-118" C="-945" G="229" T="-945"/>
			<pos A="-945" C="129" G="129" T="-118"/>
			<pos A="-118" C="-945" G="170" T="-18"/>
			<pos A="-945" C="70" G="202" T="-945"/>
			<pos A="-945" C="251" G="-945" T="-945"/>
			<pos A="162" C="-945" G="-945" T="-945"/>
			<pos A="-945" C="-945" G="-945" T="162"/>
			<pos A="-945" C="-945" G="251" T="-945"/>
			<pos A="-118" C="-945" G="-945" T="140"/>
			<pos A="-945" C="-945" G="251" T="-945"/>
			<pos A="140" C="-945" G="-30" T="-945"/>
			<pos A="162" C="-945" G="-945" T="-945"/>
			<pos A="114" C="-945" G="70" T="-945"/>
		</motif>
		<motif db="0" id="TTGACWCYTGCYCWG" alt="MEME-2" length="15" nsites="7" evalue="5.4e+001">
			<pos A="-945" C="-945" G="-945" T="162"/>
			<pos A="-945" C="-945" G="-945" T="162"/>
			<pos A="-945" C="70" G="202" T="-945"/>
			<pos A="140" C="-945" G="-945" T="-118"/>
			<pos A="-945" C="251" G="-945" T="-945"/>
			<pos A="82" C="-945" G="-30" T="-18"/>
			<pos A="-18" C="202" G="-945" T="-945"/>
			<pos A="-945" C="170" G="-945" T="40"/>
			<pos A="-945" C="-945" G="-30" T="140"/>
			<pos A="-118" C="-30" G="202" T="-945"/>
			<pos A="-118" C="229" G="-945" T="-945"/>
			<pos A="-945" C="129" G="-945" T="82"/>
			<pos A="-118" C="202" G="-30" T="-945"/>
			<pos A="-18" C="-30" G="-30" T="40"/>
			<pos A="-945" C="-945" G="251" T="-945"/>
		</motif>
	</motifs>
	<correlations>
		<correlation idx_a="0" idx_b="1" value="0.22"/>
	</correlations>
	<sequence_dbs>
		<sequence_db source="common/INO_up800.s" last_mod_date="Tue Feb  2 11:33:11 2016" seq_count="7" residue_count="5600"/>
	</sequence_dbs>
	<sequences>
		<sequence db="0" name="CHO2" comment="sequence of the region upstream from YGR157W" length="800">
			<score strand="both" combined_pvalue="2.45e-08" evalue="1.7e-07"/>
			<seg start="76">
				<data>
ACAAGATATGATCAAACAAGTTCTTACTTTGACACCTGCCCAGATCCAAAGTTTACCAAGTGACCAGCAACTTAT
				</data>
				<hit pos="104" idx="1" rc="n" pvalue="2.0e-09" match="+++++++++++++ +"/>
			</seg>
			<seg start="301">
				<data>
ATATATATTTTTGCCTTGGTTTAAATTGGTCAAGACAGTCAATTGCCACACTTTTCTCATGCCGCATTCATTATT
				</data>
				<hit pos="353" idx="0" rc="y" pvalue="2.2e-07" match="++++ ++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="FAS1" comment="sequence of the region upstream from YKL182W" length="800">
			<score strand="both" combined_pvalue="1.76e-06" evalue="1.2e-05"/>
			<seg start="1">
				<data>
CCGGGTTATAGCAGCGTCTGCTCCGCATCACGATACACGAGGTGCAGGCACGGTTCACTACTCCCCTGGCCTCCA
				</data>
				<hit pos="54" idx="1" rc="n" pvalue="9.1e-07" match="+++++  ++ +++++"/>
			</seg>
			<seg start="76">
				<data>
ACAAACGACGGCCAAAAACTTCACATGCCGCCCAGCCAAGCATAATTACGCAACAGCGATCTTTCCGTCGCACAA
				</data>
				<hit pos="94" idx="0" rc="y" pvalue="4.6e-08" match="+++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="INO1" comment="sequence of the region upstream from YJL153C" length="800">
			<score strand="both" combined_pvalue="1.85e-06" evalue="1.3e-05"/>
			<seg start="151">
				<data>
TGTTCAACAGGGATACACTATTGAACTTACTTCTCTTCCTACTGTTATTCTTCCCAGCAATCATTCACGCTTGCT
ACGTTGTATATGAAACGAGTAGTGAACGTTCGTACGATCTTTCACGCAGACATGCGACTGCGCCCGCCGTAGACC
				</data>
				<hit pos="214" idx="1" rc="n" pvalue="1.7e-06" match="+++++ ++++++  +"/>
			</seg>
			<seg start="526">
				<data>
TGAAATACGTGCCGGTGTTCCGGGGTTGGATGCGGAATCGAAAGTGTTGAATGTGAAATATGCGGAGGCCAAGTA
				</data>
				<hit pos="571" idx="0" rc="n" pvalue="2.6e-05" match="+  + ++++++++"/>
			</seg>
			<seg start="601">
				<data>
TGCGCTTCGGCGGCTAAATGCGGCATGTGAAAAGTATTGTCTATTTTATCTTCATCCTTCTTTCCCAGAATATTG
				</data>
				<hit pos="620" idx="0" rc="n" pvalue="2.5e-08" match="+++++++++++++"/>
			</seg>
			<seg start="676">
				<data>
AACTTATTTAATTCACATGGAGCAGAGAAAGCGCACCTCTGCGTTGGCGGCAATGTTAATTTGAGACGTATATAA
				</data>
				<hit pos="686" idx="0" rc="y" pvalue="9.4e-06" match=" +++++++++ ++"/>
			</seg>
		</sequence>
		<sequence db="0" name="ACC1" comment="sequence of the region upstream from YNR016C" length="800">
			<score strand="both" combined_pvalue="2.42e-06" evalue="1.7e-05"/>
			<seg start="76">
				<data>
TAAAATCTTCACATGGCCCGGCCGCGCGCGCGTTGTGCCAACAAGTCGCAGTCGAAATTCAACCGCTCATTGCCA
				</data>
				<hit pos="82" idx="0" rc="y" pvalue="1.4e-07" match="+++++++++++++"/>
			</seg>
			<seg start="526">
				<data>
ATCCTTATTTTTGGACAATAAACTAGAGAACAATTTGAACTTGAATTGGAATTCAGATTCAGAGCAAGAGACAAG
				</data>
				<hit pos="585" idx="1" rc="y" pvalue="4.1e-07" match="+++++++++ + +++"/>
			</seg>
		</sequence>
		<sequence db="0" name="OPI3" comment="sequence of the region upstream from YJR073C" length="800">
			<score strand="both" combined_pvalue="5.29e-06" evalue="3.7e-05"/>
			<seg start="301">
				<data>
AACTCCGTCAGGTCTTCCACGTGGAACTGCCAAGCCTCCTTCAGATCGCTCTTGTCGACCGTCTCCAAGAGATCC
				</data>
				<hit pos="315" idx="0" rc="y" pvalue="5.0e-05" match="++ +++ +++  +"/>
			</seg>
			<seg start="526">
				<data>
TATAATTCGACTTCCTTGTTGTTCATGCTTCCTTGATGACCAGGGTAGGTGTCAATGAGAGTGCATGTGGAAAGT
				</data>
				<hit pos="566" idx="1" rc="y" pvalue="7.4e-08" match="+++++ +++++++++"/>
				<hit pos="585" idx="0" rc="n" pvalue="1.8e-06" match=" + +++++++ ++"/>
			</seg>
		</sequence>
		<sequence db="0" name="CHO1" comment="sequence of the region upstream from YER026C" length="800">
			<score strand="both" combined_pvalue="6.78e-06" evalue="4.7e-05"/>
			<seg start="1">
				<data>
CCGACCCAAATGTAATGGAACAATATTATTTGACACTTGATCAGCAGCAAAATAATCACCAAAATATGGCCTGGT
				</data>
				<hit pos="30" idx="1" rc="n" pvalue="5.2e-07" match="++++++++++ ++ +"/>
			</seg>
			<seg start="601">
				<data>
ACTTTGAACGTTCACACGGCACCCTCACGCCTTTGAGCTTTCACATGGACCCATCTAAAGATGAAGATCCGTATT
				</data>
				<hit pos="639" idx="0" rc="y" pvalue="3.4e-07" match="++++++++++ ++"/>
			</seg>
		</sequence>
		<sequence db="0" name="FAS2" comment="sequence of the region upstream from YPL231W" length="800">
			<score strand="both" combined_pvalue="4.09e-05" evalue="0.00029"/>
			<seg start="226">
				<data>
TGATTGTATTCGCCATCATTGTAGTCGTTGTTGTTGTCGTTGTTGTCCCAGCCGTTGTCAAAACGCGTTAATTCC
				</data>
				<hit pos="272" idx="1" rc="y" pvalue="1.2e-06" match="+  +++ + ++++++"/>
			</seg>
			<seg start="526">
				<data>
GCTTAGCAAAATCCAACCATTTTTTTTTTATCTCCCGCGTTTTCACATGCTACCTCATTCGCCTCGTAACGTTAC
				</data>
				<hit pos="566" idx="0" rc="y" pvalue="1.0e-06" match="++++++++++  +"/>
			</seg>
		</sequence>
	</sequences>
	<runtime host="Timothys-iMac.rd.unr.edu" when="Mon Oct 23 13:15:49 2017" cycles="7026" seconds="0.007"/>
</mast>
