<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<mast version="5.3.2" release="Fri Feb 5 17:50:07 2021 -0800">
	<command_line><arg>mast</arg><arg>-oc</arg><arg>results/mast1</arg><arg>-nostatus</arg><arg>/Users/t.bailey/meme_git/meme/tests/meme/meme.crp0.classic.oops.txt</arg><arg>common/crp0.s</arg></command_line>
	<settings strand_handling="combine" max_correlation="0.60" remove_correlated="n" max_seq_evalue="10" adjust_hit="n" max_hit_pvalue="0.0001" max_weak_pvalue="0.0001"/>
	<alphabet name="DNA" like="dna">
		<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
		<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
		<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
		<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
		<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
		<letter id="V" symbol="V" equals="ACG" name="Not T"/>
		<letter id="H" symbol="H" equals="ACT" name="Not G"/>
		<letter id="D" symbol="D" equals="AGT" name="Not C"/>
		<letter id="B" symbol="B" equals="CGT" name="Not A"/>
		<letter id="M" symbol="M" equals="AC" name="Amino"/>
		<letter id="R" symbol="R" equals="AG" name="Purine"/>
		<letter id="W" symbol="W" equals="AT" name="Weak"/>
		<letter id="S" symbol="S" equals="CG" name="Strong"/>
		<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
		<letter id="K" symbol="K" equals="GT" name="Keto"/>
	</alphabet>
	<background source="--nrdb--" A="0.274262" C="0.22521" G="0.22521" T="0.274262"/>
	<motif_dbs>
		<motif_db source="/Users/t.bailey/meme_git/meme/tests/meme/meme.crp0.classic.oops.txt" last_mod_date="Sat Jan 30 16:47:29 2021">
			<background A="0.304" C="0.196" G="0.196" T="0.304"/>
		</motif_db>
	</motif_dbs>
	<motifs>
		<motif db="0" id="TGTGAMRTNGHTCAC" alt="MEME-1" length="15" nsites="18" evalue="9.6e-007">
			<pos A="-1081" C="-82" G="-1081" T="155"/>
			<pos A="-245" C="-182" G="218" T="-1081"/>
			<pos A="-145" C="-1081" G="-1081" T="155"/>
			<pos A="-245" C="-182" G="209" T="-245"/>
			<pos A="163" C="-1081" G="-182" T="-1081"/>
			<pos A="-45" C="118" G="-23" T="-87"/>
			<pos A="13" C="-182" G="118" T="-87"/>
			<pos A="-145" C="18" G="-23" T="72"/>
			<pos A="-13" C="-23" G="18" T="13"/>
			<pos A="-245" C="-82" G="177" T="-87"/>
			<pos A="35" C="50" G="-1081" T="13"/>
			<pos A="-1081" C="-1081" G="18" T="135"/>
			<pos A="-245" C="209" G="-1081" T="-145"/>
			<pos A="125" C="-1081" G="50" T="-1081"/>
			<pos A="-45" C="188" G="-182" T="-1081"/>
		</motif>
		<motif db="0" id="CTTTACAR" alt="MEME-2" length="8" nsites="18" evalue="2.4e+008">
			<pos A="-1081" C="235" G="-1081" T="-1081"/>
			<pos A="-45" C="-182" G="-82" T="101"/>
			<pos A="-1081" C="-1081" G="-82" T="155"/>
			<pos A="-87" C="-182" G="-182" T="125"/>
			<pos A="135" C="18" G="-1081" T="-1081"/>
			<pos A="-245" C="209" G="-1081" T="-145"/>
			<pos A="163" C="-1081" G="-182" T="-1081"/>
			<pos A="35" C="-182" G="99" T="-87"/>
		</motif>
	</motifs>
	<correlations>
		<correlation idx_a="0" idx_b="1" value="0.36"/>
	</correlations>
	<sequence_dbs>
		<sequence_db source="common/crp0.s" last_mod_date="Sun Mar  1 14:58:12 2020" seq_count="18" residue_count="1890"/>
	</sequence_dbs>
	<sequences>
		<sequence db="0" name="lac" comment="9 80" length="105">
			<score strand="both" combined_pvalue="9.34e-05" evalue="0.0017"/>
			<seg start="1">
				<data>
AACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTG
				</data>
				<hit pos="12" idx="0" rc="n" pvalue="7.1e-07" match="+++++  + ++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="ilv" comment="39" length="105">
			<score strand="both" combined_pvalue="1.79e-04" evalue="0.0032"/>
			<seg start="1">
				<data>
GCTCCGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAAACGTGATCAACCCCTCAATTTTCCCTTTGCTGAAA
				</data>
				<hit pos="43" idx="0" rc="y" pvalue="2.3e-05" match="+++++++++  + ++"/>
			</seg>
			<seg start="76">
				<data>
AATTTTCCATTGTCTCCCCTGTAAAGCTGT
				</data>
				<hit pos="94" idx="1" rc="y" pvalue="1.8e-05" match="++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="tdc" comment="78" length="105">
			<score strand="both" combined_pvalue="4.92e-04" evalue="0.0089"/>
			<seg start="1">
				<data>
GATTTTTATACTTTAACTTGTTGATATTTAAAGGTATTTAATTGTAATAACGATACTCTGGAAAGTATTGAAAGT
				</data>
				<hit pos="58" idx="1" rc="y" pvalue="5.4e-05" match="++++++++"/>
			</seg>
			<seg start="76">
				<data>
TAATTTGTGAGTGGTCGCACATATCCTGTT
				</data>
				<hit pos="81" idx="0" rc="n" pvalue="2.3e-05" match="+++++   + +++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="deop2" comment="7 60" length="105">
			<score strand="both" combined_pvalue="5.06e-04" evalue="0.0091"/>
			<seg start="1">
				<data>
AGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATC
GAAGTGTGTTGCGGAGTAGATGTTAGAATA
				</data>
				<hit pos="24" idx="1" rc="n" pvalue="7.2e-05" match="+ ++++++"/>
				<hit pos="63" idx="0" rc="n" pvalue="1.8e-05" match="+++++ +++ ++++ "/>
			</seg>
		</sequence>
		<sequence db="0" name="ara" comment="17 55" length="105">
			<score strand="both" combined_pvalue="6.97e-04" evalue="0.013"/>
			<seg start="1">
				<data>
GACAAAAACGCGTAACAAAAGTGTCTATAATCACGGCAGAAAAGTCCACATTGATTATTTGCACGGCGTCACACT
				</data>
				<hit pos="59" idx="0" rc="y" pvalue="2.1e-06" match=" +++++ ++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="ompa" comment="48" length="105">
			<score strand="both" combined_pvalue="1.05e-03" evalue="0.019"/>
			<seg start="1">
				<data>
GCTGACAAAAAAGATTAAACATACCTTATACAAGACTTTTTTTTCATATGCCTGACGGAGTTCACACTTGTAAGT
				</data>
				<hit pos="51" idx="0" rc="n" pvalue="2.3e-05" match="  +++++  ++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="male" comment="14" length="105">
			<score strand="both" combined_pvalue="1.20e-03" evalue="0.022"/>
			<seg start="1">
				<data>
ACATTACCGCCAATTCTGTAACAGAGATCACACAAAGCGACGGTGGGGCGTAGGGGCAAGGAGGATGGAAAGAGG
				</data>
				<hit pos="17" idx="0" rc="n" pvalue="1.2e-05" match="+++ +++  ++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="uxu1" comment="17" length="105">
			<score strand="both" combined_pvalue="1.82e-03" evalue="0.033"/>
			<seg start="1">
				<data>
CCCATGAGAGTGAAATTGTTGTGATGTGGTTAACCCAATTAGAATTCGGGATTGACATGTCTTACCAAAAGGTAG
				</data>
				<hit pos="20" idx="0" rc="n" pvalue="9.7e-06" match="+++++ ++++++ ++"/>
			</seg>
		</sequence>
		<sequence db="0" name="malt" comment="41" length="105">
			<score strand="both" combined_pvalue="1.87e-03" evalue="0.034"/>
			<seg start="1">
				<data>
GATCAGCGTCGTTTTAGGTGAGTTGTTAATAAAGATTTGGAATTGTGACACAGTGCAAATTCAGACACATAAAAA
				</data>
				<hit pos="44" idx="0" rc="n" pvalue="4.4e-06" match="++++++++ +++++ "/>
			</seg>
		</sequence>
		<sequence db="0" name="ce1cg" comment="17 61" length="105">
			<score strand="both" combined_pvalue="2.19e-03" evalue="0.039"/>
			<seg start="1">
				<data>
TAATGTTTGTGCTGGTTTTTGTGGCATCGGGCGAGAATAGCGCGTGGTGTGAAAGACTGTTTTTTTGATCGTTTT
CACAAAAATGGAAGTCCACAGTCTTGACAG
				</data>
				<hit pos="65" idx="0" rc="y" pvalue="1.8e-05" match=" +++++  + +++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="cya" comment="50" length="105">
			<score strand="both" combined_pvalue="2.20e-03" evalue="0.04"/>
			<seg start="1">
				<data>
ACGGTGCTACACTTGTATGTAGCGCATCTTTCTTTACGGTCAATCAGCAAGGTGTTAAATTGATCACGTTTTAGA
				</data>
				<hit pos="53" idx="0" rc="n" pvalue="1.4e-05" match="+++ + +++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="pbr322" comment="53" length="105">
			<score strand="both" combined_pvalue="2.33e-03" evalue="0.042"/>
			<seg start="1">
				<data>
CTGGCTTAACTATGCGGCATCAGAGCAGATTGTACTGAGAGTGCACCATATGCGGTGTGAAATACCGCACAGATG
				</data>
				<hit pos="56" idx="0" rc="n" pvalue="8.8e-06" match="+++++ ++  +++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="crp" comment="63" length="105">
			<score strand="both" combined_pvalue="3.18e-03" evalue="0.057"/>
			<seg start="1">
				<data>
CACAAAGCGAAAGCTATGCTAAAACAGTCAGGATGCTACAGTAATACATTGATGTACTGCATGTATGCAAAGGAC
GTCACATTACCGTGCAGTACAGTTGATAGC
				</data>
				<hit pos="67" idx="0" rc="y" pvalue="1.8e-05" match="++ ++  ++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="trn9cat" comment="1 84" length="105">
			<score strand="both" combined_pvalue="5.85e-03" evalue="0.11"/>
			<seg start="76">
				<data>
TTTGGCGAAAATGAGACGTTGATCGGCACG
				</data>
				<hit pos="87" idx="0" rc="n" pvalue="1.8e-05" match="++ +++++++++++ "/>
			</seg>
		</sequence>
		<sequence db="0" name="malk" comment="29 61" length="105">
			<score strand="both" combined_pvalue="8.34e-03" evalue="0.15"/>
			<seg start="1">
				<data>
GGAGGAGGCGGGAGGATGAGAACACGGCTTCTGTGAACTAAACCGAGGTCATGTAAGGAATTTCGTGATGTTGCT
TGCAAAAATCGTGGCGATTTTATGTGCGCA
				</data>
				<hit pos="64" idx="0" rc="n" pvalue="3.2e-05" match=" ++++ ++++++ ++"/>
			</seg>
		</sequence>
		<sequence db="0" name="tnaa" comment="71 " length="105">
			<score strand="both" combined_pvalue="8.65e-03" evalue="0.16"/>
			<seg start="1">
				<data>
TTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAAAAGCATTTAATATTGCTCCCCGAACGATTG
TGATTCGATTCACATTTAAACAATTTCAGA
				</data>
				<hit pos="75" idx="0" rc="y" pvalue="2.8e-05" match="+++++ ++  +++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="gale" comment="42" length="105">
			<score strand="both" combined_pvalue="9.40e-03" evalue="0.17"/>
			<seg start="1">
				<data>
GCGCATAAAAAACGGCTAAATTCTTGTGTAAACGATTCCACTAATTTATTCCATGTCACACTTTTCGCATCTTTG
				</data>
				<hit pos="54" idx="0" rc="n" pvalue="4.8e-05" match="+++ +++++ +++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="bglr1" comment="76" length="105">
			<score strand="both" combined_pvalue="1.29e-02" evalue="0.23"/>
			<seg start="76">
				<data>
AACTGTGAGCATGGTCATATTTTTATCAAT
				</data>
				<hit pos="80" idx="0" rc="y" pvalue="6.9e-05" match="+++++++  ++++ +"/>
			</seg>
		</sequence>
	</sequences>
	<runtime host="Timothys-Mac-Mini.local" when="Fri Feb  5 18:54:29 2021" cycles="5596" seconds="0.006"/>
</mast>
