<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<mast version="5.0.0" release="Wed Oct 11 17:39:42 2017 -0700">
	<command_line><arg>mast</arg><arg>-oc</arg><arg>results/mast7</arg><arg>-nostatus</arg><arg>meme/meme.crp0.cd.zoops.txt</arg><arg>common/crp0.s</arg></command_line>
	<settings strand_handling="combine" max_correlation="0.60" remove_correlated="n" max_seq_evalue="10" adjust_hit="n" max_hit_pvalue="0.0001" max_weak_pvalue="0.0001"/>
	<alphabet name="DNA" like="dna">
		<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
		<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
		<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
		<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
		<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
		<letter id="V" symbol="V" equals="ACG" name="Not T"/>
		<letter id="H" symbol="H" equals="ACT" name="Not G"/>
		<letter id="D" symbol="D" equals="AGT" name="Not C"/>
		<letter id="B" symbol="B" equals="CGT" name="Not A"/>
		<letter id="M" symbol="M" equals="AC" name="Amino"/>
		<letter id="R" symbol="R" equals="AG" name="Purine"/>
		<letter id="W" symbol="W" equals="AT" name="Weak"/>
		<letter id="S" symbol="S" equals="CG" name="Strong"/>
		<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
		<letter id="K" symbol="K" equals="GT" name="Keto"/>
	</alphabet>
	<background source="--nrdb--" A="0.274262" C="0.22521" G="0.22521" T="0.274262"/>
	<motif_dbs>
		<motif_db source="meme/meme.crp0.cd.zoops.txt" last_mod_date="Fri Oct 20 16:36:42 2017">
			<background A="0.304" C="0.196" G="0.196" T="0.304"/>
		</motif_db>
	</motif_dbs>
	<motifs>
		<motif db="0" id="RWAWRYKGWGKGR" alt="MEME-1" length="13" nsites="5" evalue="7.0e+000">
			<pos A="71" C="-765" G="135" T="-765"/>
			<pos A="71" C="-765" G="-765" T="71"/>
			<pos A="171" C="-765" G="-765" T="-765"/>
			<pos A="71" C="-765" G="-765" T="71"/>
			<pos A="71" C="-765" G="135" T="-765"/>
			<pos A="-765" C="135" G="-765" T="71"/>
			<pos A="-765" C="-765" G="135" T="71"/>
			<pos A="-765" C="-765" G="235" T="-765"/>
			<pos A="71" C="-765" G="-765" T="71"/>
			<pos A="-765" C="-765" G="235" T="-765"/>
			<pos A="-765" C="-765" G="135" T="71"/>
			<pos A="-765" C="-765" G="235" T="-765"/>
			<pos A="71" C="-765" G="135" T="-765"/>
		</motif>
		<motif db="0" id="ATTCCTDA" alt="MEME-2" length="8" nsites="7" evalue="1.7e-001">
			<pos A="139" C="-897" G="-897" T="-60"/>
			<pos A="-897" C="-897" G="-897" T="172"/>
			<pos A="-897" C="3" G="3" T="98"/>
			<pos A="-897" C="235" G="-897" T="-897"/>
			<pos A="-897" C="235" G="-897" T="-897"/>
			<pos A="-897" C="-897" G="3" T="139"/>
			<pos A="39" C="-897" G="3" T="39"/>
			<pos A="172" C="-897" G="-897" T="-897"/>
		</motif>
	</motifs>
	<correlations>
		<correlation idx_a="0" idx_b="1" value="0.26"/>
	</correlations>
	<sequence_dbs>
		<sequence_db source="common/crp0.s" last_mod_date="Tue Feb  2 11:33:11 2016" seq_count="18" residue_count="1890"/>
	</sequence_dbs>
	<sequences>
		<sequence db="0" name="lac" comment="9 80" length="105">
			<score strand="both" combined_pvalue="2.33e-03" evalue="0.042"/>
			<seg start="1">
				<data>
AACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTG
TGTGGAATTGTGAGCGGATAACAATTTCAC
				</data>
				<hit pos="68" idx="0" rc="n" pvalue="4.5e-06" match="+++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="pbr322" comment="53" length="105">
			<score strand="both" combined_pvalue="2.91e-03" evalue="0.052"/>
			<seg start="1">
				<data>
CTGGCTTAACTATGCGGCATCAGAGCAGATTGTACTGAGAGTGCACCATATGCGGTGTGAAATACCGCACAGATG
				</data>
				<hit pos="48" idx="0" rc="n" pvalue="4.5e-06" match="+++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="ilv" comment="39" length="105">
			<score strand="both" combined_pvalue="4.18e-03" evalue="0.075"/>
			<seg start="1">
				<data>
GCTCCGGCGGGGTTTTTTGTTATCTGCAATTCAGTACAAAACGTGATCAACCCCTCAATTTTCCCTTTGCTGAAA
				</data>
				<hit pos="51" idx="0" rc="y" pvalue="4.5e-06" match="+++++++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="malk" comment="29 61" length="105">
			<score strand="both" combined_pvalue="1.26e-02" evalue="0.23"/>
			<seg start="1">
				<data>
GGAGGAGGCGGGAGGATGAGAACACGGCTTCTGTGAACTAAACCGAGGTCATGTAAGGAATTTCGTGATGTTGCT
				</data>
				<hit pos="54" idx="1" rc="y" pvalue="4.3e-05" match="++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="bglr1" comment="76" length="105">
			<score strand="both" combined_pvalue="3.27e-02" evalue="0.59"/>
			<seg start="1">
				<data>
ACAAATCCCAATAACTTAATTATTGGGATTTGTTATATATAACTTTATAAATTCCTAAAATTACACAAAGTTAAT
				</data>
				<hit pos="51" idx="1" rc="n" pvalue="4.3e-05" match="++++++++"/>
			</seg>
		</sequence>
		<sequence db="0" name="uxu1" comment="17" length="105">
			<score strand="both" combined_pvalue="6.55e-02" evalue="1.2"/>
		</sequence>
		<sequence db="0" name="ompa" comment="48" length="105">
			<score strand="both" combined_pvalue="9.55e-02" evalue="1.7"/>
		</sequence>
		<sequence db="0" name="deop2" comment="7 60" length="105">
			<score strand="both" combined_pvalue="1.21e-01" evalue="2.2"/>
		</sequence>
		<sequence db="0" name="male" comment="14" length="105">
			<score strand="both" combined_pvalue="1.46e-01" evalue="2.6"/>
		</sequence>
		<sequence db="0" name="ara" comment="17 55" length="105">
			<score strand="both" combined_pvalue="2.78e-01" evalue="5"/>
		</sequence>
		<sequence db="0" name="malt" comment="41" length="105">
			<score strand="both" combined_pvalue="4.21e-01" evalue="7.6"/>
		</sequence>
		<sequence db="0" name="cya" comment="50" length="105">
			<score strand="both" combined_pvalue="5.06e-01" evalue="9.1"/>
		</sequence>
	</sequences>
	<runtime host="Timothys-iMac.rd.unr.edu" when="Mon Oct 23 13:15:48 2017" cycles="4388" seconds="0.004"/>
</mast>
