
2021-05-17 CRAC_Pipeline_SE
 17:08:56 - analysing the following files:
/homes2/openngs/openngs/packages/CRAC_pipelines/test_1.fastq

 17:08:57 - No demultiplexing requested. Trimming reads
 17:08:57 - Collapsing reads
 17:08:57 - Aligning reads
 17:08:57 - Mapping reads to genomic features
 17:08:57 - Making bedgraph files

2021-05-17 CRAC_Pipeline_SE
 17:09:14 - analysing the following files:
/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq

 17:09:14 - No demultiplexing requested. Trimming reads
 17:09:14 - Collapsing reads
 17:09:14 - Aligning reads
 17:09:14 - Mapping reads to genomic features
 17:09:14 - Making bedgraph files
 17:09:15 - flexbar -r '/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq' -qf i1.8 --output-reads '/homes2/openngs/openngs/packages/CRAC_pipelines/test_single_end_run/flexbar_trimmed/test_1_trimmed.fastq' -n 10 -ao 7 --adapters 'adapter_sequences/three_prime_adapters.fasta' -qt 30

2021-05-17 CRAC_Pipeline_SE
 17:20:08 - analysing the following files:
/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq

 17:20:09 - No demultiplexing requested. Trimming reads
 17:20:09 - Collapsing reads
 17:20:09 - Aligning reads
 17:20:09 - Mapping reads to genomic features
 17:20:09 - Making bedgraph files

2021-05-17 CRAC_Pipeline_SE
 17:20:24 - analysing the following files:
/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq

 17:20:24 - No demultiplexing requested. Trimming reads
 17:20:24 - Collapsing reads
 17:20:24 - Aligning reads
 17:20:24 - Mapping reads to genomic features
 17:20:24 - Making bedgraph files

2021-05-17 CRAC_Pipeline_SE
 17:20:42 - analysing the following files:
/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq

 17:20:43 - No demultiplexing requested. Trimming reads
 17:20:43 - Collapsing reads
 17:20:43 - Aligning reads
 17:20:43 - Mapping reads to genomic features
 17:20:43 - Making bedgraph files
 17:20:43 - flexbar -r '/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq' -qf i1.8 -n 10 -ao 7 --output-reads '/homes2/openngs/openngs/packages/CRAC_pipelines/test_single_end_run/flexbar_trimmed/test_1_trimmed.fastq' --adapters 'adapter_sequences/three_prime_adapters.fasta' -qt 30

2021-05-17 CRAC_Pipeline_SE
 17:21:27 - analysing the following files:
/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq

 17:21:28 - No demultiplexing requested. Trimming reads
 17:21:28 - Collapsing reads
 17:21:28 - Aligning reads
 17:21:28 - Mapping reads to genomic features
 17:21:28 - Making bedgraph files
 17:21:28 - flexbar -r '/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq' -qf i1.8 -n 10 -ao 7 --output-reads '/homes2/openngs/openngs/packages/CRAC_pipelines/test_single_end_run/flexbar_trimmed/test_1_trimmed.fastq' --adapters 'adapter_sequences/three_prime_adapters.fasta' -qt 30

2021-05-17 CRAC_Pipeline_SE
 17:22:56 - analysing the following files:
/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq

 17:22:57 - No demultiplexing requested. Trimming reads
 17:22:57 - Collapsing reads
 17:22:57 - Aligning reads
 17:22:57 - Mapping reads to genomic features
 17:22:57 - Making bedgraph files
 17:22:57 - flexbar -r '/homes2/openngs/openngs/packages/CRAC_pipelines/test_data/test_1.fastq' -f i1.8 -n 10 -ao 7 --output-reads '/homes2/openngs/openngs/packages/CRAC_pipelines/test_single_end_run/flexbar_trimmed/test_1_trimmed.fastq' --adapters 'adapter_sequences/three_prime_adapters.fasta' -qt 30
