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Right clicking (multi-button mouse) or ctrl clicking (single-button mouse) anywhere on the trace box displays a contextual menu with the options to:
- Copy the selected sequence
- Paste a base
- Insert Before Base
- Delete Base
- Convert to Uppercase (a base or range of bases)
- Convert to Lowercase (a base or range of bases)
- Replace with X’s (a base or range of bases)
- Replace with N’s (a base or range of bases)
- Select All of the bases
- Display the Nucleotide Sequence in the info window
- BLAST Sequence

Right clicking (multi-button mouse) or ctrl clicking (single-button mouse) in the Go To Base No. or Find Sequence boxes displays a contextual menu with standard options.
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