mpi4py.util.pkl5 — MPI for Python 3.1.4 documentation

# mpi4py.util.pkl5

New in version 3.1.0.

`pickle` protocol 5 (see PEP 574) introduced support for out-of-band buffers, allowing for more efficient handling of certain object types with large memory footprints.

MPI for Python uses the traditional in-band handling of buffers. This approach is appropriate for communicating non-buffer Python objects, or buffer-like objects with small memory footprints. For point-to-point communication, in-band buffer handling allows for the communication of a pickled stream with a single MPI message, at the expense of additional CPU and memory overhead in the pickling and unpickling steps.

The `mpi4py.util.pkl5` module provides communicator wrapper classes reimplementing pickle-based point-to-point communication methods using pickle protocol 5. Handling out-of-band buffers necessarily involve multiple MPI messages, thus increasing latency and hurting performance in case of small size data. However, in case of large size data, the zero-copy savings of out-of-band buffer handling more than offset the extra latency costs. Additionally, these wrapper methods overcome the infamous 2 GiB message count limit (MPI-1 to MPI-3).

Note

Support for pickle protocol 5 is available in the `pickle` module within the Python standard library since Python 3.8. Previous Python 3 releases can use the `pickle5` backport, which is available on PyPI and can be installed with:

    python -m pip install pickle5

class mpi4py.util.pkl5.Request(request=None)

  Request.

  Custom request class for nonblocking communications.

  Note

  `Request` is not a subclass of `mpi4py.MPI.Request`

  Parameters:

    request (Iterable[MPI.Request]) –

  Return type:

    Request

  Free()

    Free a communication request.

    Return type:

      None

  cancel()

    Cancel a communication request.

    Return type:

      None

  get_status(status=None)

    Non-destructive test for the completion of a request.

    Parameters:

      status (Optional[Status]) –

    Return type:

      bool

  test(status=None)

    Test for the completion of a request.

    Parameters:

      status (Optional[Status]) –

    Return type:

      Tuple[bool, Optional[Any]]

  wait(status=None)

    Wait for a request to complete.

    Parameters:

      status (Optional[Status]) –

    Return type:

      Any

  classmethod testall(requests, statuses=None)

    Test for the completion of all requests.

    Classmethod:

  classmethod waitall(requests, statuses=None)

    Wait for all requests to complete.

    Classmethod:

class mpi4py.util.pkl5.Message(message=None)

  Message.

  Custom message class for matching probes.

  Note

  `Message` is not a subclass of `mpi4py.MPI.Message`

  Parameters:

    message (Iterable[MPI.Message]) –

  Return type:

    Message

  recv(status=None)

    Blocking receive of matched message.

    Parameters:

      status (Optional[Status]) –

    Return type:

      Any

  irecv()

    Nonblocking receive of matched message.

    Return type:

      Request

  classmethod probe(comm, source=ANY_SOURCE, tag=ANY_TAG, status=None)

    Blocking test for a matched message.

    Classmethod:

  classmethod iprobe(comm, source=ANY_SOURCE, tag=ANY_TAG, status=None)

    Nonblocking test for a matched message.

    Classmethod:

class mpi4py.util.pkl5.Comm

  Communicator.

  Base communicator wrapper class.

  send(obj, dest, tag=0)

    Blocking send in standard mode.

    Parameters:

      - obj (Any) –

      - dest (int) –

      - tag (int) –

    Return type:

      None

  bsend(obj, dest, tag=0)

    Blocking send in buffered mode.

    Parameters:

      - obj (Any) –

      - dest (int) –

      - tag (int) –

    Return type:

      None

  ssend(obj, dest, tag=0)

    Blocking send in synchronous mode.

    Parameters:

      - obj (Any) –

      - dest (int) –

      - tag (int) –

    Return type:

      None

  isend(obj, dest, tag=0)

    Nonblocking send in standard mode.

    Parameters:

      - obj (Any) –

      - dest (int) –

      - tag (int) –

    Return type:

      Request

  ibsend(obj, dest, tag=0)

    Nonblocking send in buffered mode.

    Parameters:

      - obj (Any) –

      - dest (int) –

      - tag (int) –

    Return type:

      Request

  issend(obj, dest, tag=0)

    Nonblocking send in synchronous mode.

    Parameters:

      - obj (Any) –

      - dest (int) –

      - tag (int) –

    Return type:

      Request

  recv(buf=None, source=ANY_SOURCE, tag=ANY_TAG, status=None)

    Blocking receive.

    Parameters:

      - buf (Optional[Buffer]) –

      - source (int) –

      - tag (int) –

      - status (Optional[Status]) –

    Return type:

      Any

  irecv(buf=None, source=ANY_SOURCE, tag=ANY_TAG)

    Nonblocking receive.

    Warning

    This method cannot be supported reliably and raises `RuntimeError`.

    Parameters:

      - buf (Optional[Buffer]) –

      - source (int) –

      - tag (int) –

    Return type:

      Request

  sendrecv(sendobj, dest, sendtag=0, recvbuf=None, source=ANY_SOURCE, recvtag=ANY_TAG, status=None)

    Send and receive.

    Parameters:

      - sendobj (Any) –

      - dest (int) –

      - sendtag (int) –

      - recvbuf (Optional[Buffer]) –

      - source (int) –

      - recvtag (int) –

      - status (Optional[Status]) –

    Return type:

      Any

  mprobe(source=ANY_SOURCE, tag=ANY_TAG, status=None)

    Blocking test for a matched message.

    Parameters:

      - source (int) –

      - tag (int) –

      - status (Optional[Status]) –

    Return type:

      Message

  improbe(source=ANY_SOURCE, tag=ANY_TAG, status=None)

    Nonblocking test for a matched message.

    Parameters:

      - source (int) –

      - tag (int) –

      - status (Optional[Status]) –

    Return type:

      Optional[Message]

  bcast(obj, root=0)

    Broadcast.

    Parameters:

      - obj (Any) –

      - root (int) –

    Return type:

      Any

class mpi4py.util.pkl5.Intracomm

  Intracommunicator.

  Intracommunicator wrapper class.

class mpi4py.util.pkl5.Intercomm

  Intercommunicator.

  Intercommunicator wrapper class.

## Examples

`test-pkl5-1.py`

     1import numpy as np
     2from mpi4py import MPI
     3from mpi4py.util import pkl5
     4
     5comm = pkl5.Intracomm(MPI.COMM_WORLD)  # comm wrapper
     6size = comm.Get_size()
     7rank = comm.Get_rank()
     8dst = (rank + 1) % size
     9src = (rank - 1) % size
    10
    11sobj = np.full(1024**3, rank, dtype='i4')  # > 4 GiB
    12sreq = comm.isend(sobj, dst, tag=42)
    13robj = comm.recv (None, src, tag=42)
    14sreq.Free()
    15
    16assert np.min(robj) == src
    17assert np.max(robj) == src

`test-pkl5-2.py`

     1import numpy as np
     2from mpi4py import MPI
     3from mpi4py.util import pkl5
     4
     5comm = pkl5.Intracomm(MPI.COMM_WORLD)  # comm wrapper
     6size = comm.Get_size()
     7rank = comm.Get_rank()
     8dst = (rank + 1) % size
     9src = (rank - 1) % size
    10
    11sobj = np.full(1024**3, rank, dtype='i4')  # > 4 GiB
    12sreq = comm.isend(sobj, dst, tag=42)
    13
    14status = MPI.Status()
    15rmsg = comm.mprobe(status=status)
    16assert status.Get_source() == src
    17assert status.Get_tag() == 42
    18rreq = rmsg.irecv()
    19robj = rreq.wait()
    20
    21sreq.Free()
    22assert np.max(robj) == src
    23assert np.min(robj) == src