API
===


Command Line API
----------------

CLI Usage 
~~~~~~~~~

.. toctree::
    cliapi

Library API
-----------

The Analysis module
~~~~~~~~~~~~~~~~~~~

.. toctree::
    api_analysis

The Estimation module
~~~~~~~~~~~~~~~~~~~~~

.. toctree::
    api_estimation

The Neighbors module
~~~~~~~~~~~~~~~~~~~~

.. toctree::
    api_neighbors

The Diffusion module
~~~~~~~~~~~~~~~~~~~~

.. toctree::
    api_diffusion

The Serialization module
~~~~~~~~~~~~~~~~~~~~~~~~

.. toctree::
    api_serialization

Internals
---------

.. toctree::
    api_cli_internals

Customizable Internals
----------------------

.. toctree::
    api_cli_logic

