<?xml version='1.0' encoding='UTF-8' standalone='no'?>
<doxygen xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="compound.xsd" version="1.15.0" xml:lang="en-US">
  <compounddef id="group__probing__data__strategy__deigan" kind="group">
    <compoundname>probing_data_strategy_deigan</compoundname>
    <title>Probing_data_strategy_deigan</title>
    <sectiondef kind="func">
      <memberdef kind="function" id="group__probing__data__strategy__deigan_1gad4c59d7b8f81c07e624a3b3594db7e8e" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>double *</type>
        <definition>double * vrna_probing_strategy_deigan</definition>
        <argsstring>(vrna_fold_compound_t *fc, const double *data, size_t data_size, unsigned int target, void *options)</argsstring>
        <name>vrna_probing_strategy_deigan</name>
        <param>
          <type><ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref> *</type>
          <declname>fc</declname>
        </param>
        <param>
          <type>const double *</type>
          <declname>data</declname>
        </param>
        <param>
          <type>size_t</type>
          <declname>data_size</declname>
        </param>
        <param>
          <type>unsigned int</type>
          <declname>target</declname>
        </param>
        <param>
          <type>void *</type>
          <declname>options</declname>
        </param>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/probing/strategy_deigan.h" line="39" column="1" declfile="ViennaRNA/probing/strategy_deigan.h" declline="39" declcolumn="1"/>
      </memberdef>
      <memberdef kind="function" id="group__probing__data__strategy__deigan_1gafcfbb711076b442308e8277585262fa2" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>void *</type>
        <definition>void * vrna_probing_strategy_deigan_options</definition>
        <argsstring>(double m, double b, double max_value, vrna_math_fun_dbl_f cb_preprocess, vrna_math_fun_dbl_opt_t cb_preprocess_opt, vrna_math_fun_dbl_opt_free_f cb_preprocess_opt_free)</argsstring>
        <name>vrna_probing_strategy_deigan_options</name>
        <param>
          <type>double</type>
          <declname>m</declname>
        </param>
        <param>
          <type>double</type>
          <declname>b</declname>
        </param>
        <param>
          <type>double</type>
          <declname>max_value</declname>
        </param>
        <param>
          <type><ref refid="group__math__scalar_1ga868f4010e57fb868ce11804b77f04c2f" kindref="member">vrna_math_fun_dbl_f</ref></type>
          <declname>cb_preprocess</declname>
        </param>
        <param>
          <type><ref refid="group__math__scalar_1ga486680b7d43688e2bcbec959a547ffee" kindref="member">vrna_math_fun_dbl_opt_t</ref></type>
          <declname>cb_preprocess_opt</declname>
        </param>
        <param>
          <type><ref refid="group__math__scalar_1ga8a609e60df9775ae99eb5c29f9bfb7a8" kindref="member">vrna_math_fun_dbl_opt_free_f</ref></type>
          <declname>cb_preprocess_opt_free</declname>
        </param>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/probing/strategy_deigan.h" line="47" column="1" declfile="ViennaRNA/probing/strategy_deigan.h" declline="47" declcolumn="1"/>
      </memberdef>
      <memberdef kind="function" id="group__probing__data__strategy__deigan_1gab0701377885f02f85d357602864e14ab" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>void</type>
        <definition>void vrna_probing_strategy_deigan_options_free</definition>
        <argsstring>(void *options)</argsstring>
        <name>vrna_probing_strategy_deigan_options_free</name>
        <param>
          <type>void *</type>
          <declname>options</declname>
        </param>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/probing/strategy_deigan.h" line="56" column="1" declfile="ViennaRNA/probing/strategy_deigan.h" declline="56" declcolumn="1"/>
      </memberdef>
      <memberdef kind="function" id="group__probing__data__strategy__deigan_1gacf014a1ab73e49cde659fc441d59e38b" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type><ref refid="group__probing__data_1gae981b94d5dabe6a32cbe74cd5dd7f925" kindref="member">vrna_probing_data_t</ref></type>
        <definition>vrna_probing_data_t vrna_probing_data_deigan</definition>
        <argsstring>(const double *reactivities, unsigned int n, double m, double b)</argsstring>
        <name>vrna_probing_data_deigan</name>
        <param>
          <type>const double *</type>
          <declname>reactivities</declname>
        </param>
        <param>
          <type>unsigned int</type>
          <declname>n</declname>
        </param>
        <param>
          <type>double</type>
          <declname>m</declname>
        </param>
        <param>
          <type>double</type>
          <declname>b</declname>
        </param>
        <briefdescription>
<para>Prepare probing data according to Deigan et al. 2009 method. </para>
        </briefdescription>
        <detaileddescription>
<para>Prepares a data structure to be used with <ref refid="group__probing__data_1gaea5dded27f3e993c69ff617ff0f09648" kindref="member">vrna_sc_probing()</ref> to directed RNA folding using the simple linear ansatz</para>
<para><formula id="169">\[ \Delta G_{\text{SHAPE}}(i) = m \ln(\text{SHAPE reactivity}(i)+1)+ b \]</formula></para>
<para>to convert probing data, e.g. SHAPE reactivity values, to pseudo energies whenever a nucleotide <formula id="55">$ i $</formula> contributes to a stacked pair. A positive slope <formula id="170">$ m $</formula> penalizes high reactivities in paired regions, while a negative intercept <formula id="88">$ b $</formula> results in a confirmatory <emphasis>bonus</emphasis> free energy for correctly predicted base pairs. Since the energy evaluation of a base pair stack involves two pairs, the pseudo energies are added for all four contributing nucleotides. Consequently, the energy term is applied twice for pairs inside a helix and only once for pairs adjacent to other structures. For all other loop types the energy model remains unchanged even when the experimental data highly disagrees with a certain motif.</para>
<para><simplesect kind="note"><para>For further details, we refer to  <verbatim>embed:rst:inline  :cite:t:`deigan:2009` </verbatim>.</para>
</simplesect>
<simplesect kind="see"><para><ref refid="group__probing__data_1gae981b94d5dabe6a32cbe74cd5dd7f925" kindref="member">vrna_probing_data_t</ref>, <ref refid="group__probing__data_1ga8c8e987c91b357fd09913f356f5d25da" kindref="member">vrna_probing_data_free()</ref>, <ref refid="group__probing__data_1gaea5dded27f3e993c69ff617ff0f09648" kindref="member">vrna_sc_probing()</ref>, <ref refid="group__probing__data__strategy__deigan_1ga83a8ff8d6404614f9d17d37e6244349c" kindref="member">vrna_probing_data_deigan_comparative()</ref>, <ref refid="group__probing__data__strategy__zarringhalam_1gaa68eaff93fd3c628ed25ca5fdfc5264b" kindref="member">vrna_probing_data_zarringhalam()</ref>, <ref refid="group__probing__data__strategy__zarringhalam_1ga166a5a5d9f6effde96fc1b79a17a003a" kindref="member">vrna_probing_data_zarringhalam_comparative()</ref>, <ref refid="group__probing__data__strategy__eddy_1ga6238432ed277208b3034b917886e200b" kindref="member">vrna_probing_data_eddy()</ref>, <ref refid="group__probing__data__strategy__eddy_1gab4db5191cddaa5d34861affcab95353d" kindref="member">vrna_probing_data_eddy_comparative()</ref></para>
</simplesect>
<parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername>reactivities</parametername>
</parameternamelist>
<parameterdescription>
<para>1-based array of per-nucleotide probing data, e.g. SHAPE reactivities </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>n</parametername>
</parameternamelist>
<parameterdescription>
<para>The length of the <computeroutput>reactivities</computeroutput> list </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>m</parametername>
</parameternamelist>
<parameterdescription>
<para>The slope used for the probing data to soft constraints conversion strategy </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>b</parametername>
</parameternamelist>
<parameterdescription>
<para>The intercept used for the probing data to soft constraints conversion strategy </para>
</parameterdescription>
</parameteritem>
</parameterlist>
<simplesect kind="return"><para>A pointer to a data structure containing the probing data and any preparations necessary to use it in <ref refid="group__probing__data_1gaea5dded27f3e993c69ff617ff0f09648" kindref="member">vrna_sc_probing()</ref> according to the method of  <verbatim>embed:rst:inline  :cite:t:`deigan:2009` </verbatim> or <bold>NULL</bold> on any error. </para>
</simplesect>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/probing/strategy_deigan.h" line="93" column="1" declfile="ViennaRNA/probing/strategy_deigan.h" declline="93" declcolumn="1"/>
      </memberdef>
      <memberdef kind="function" id="group__probing__data__strategy__deigan_1gacc07b4d140779251dcf3839846d99251" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type><ref refid="group__probing__data_1gae981b94d5dabe6a32cbe74cd5dd7f925" kindref="member">vrna_probing_data_t</ref></type>
        <definition>vrna_probing_data_t vrna_probing_data_deigan_trans</definition>
        <argsstring>(const double *reactivities, unsigned int n, double m, double b, vrna_math_fun_dbl_f cb_preprocess, vrna_math_fun_dbl_opt_t cb_preprocess_opt, vrna_math_fun_dbl_opt_free_f cb_preprocess_opt_free)</argsstring>
        <name>vrna_probing_data_deigan_trans</name>
        <param>
          <type>const double *</type>
          <declname>reactivities</declname>
        </param>
        <param>
          <type>unsigned int</type>
          <declname>n</declname>
        </param>
        <param>
          <type>double</type>
          <declname>m</declname>
        </param>
        <param>
          <type>double</type>
          <declname>b</declname>
        </param>
        <param>
          <type><ref refid="group__math__scalar_1ga868f4010e57fb868ce11804b77f04c2f" kindref="member">vrna_math_fun_dbl_f</ref></type>
          <declname>cb_preprocess</declname>
        </param>
        <param>
          <type><ref refid="group__math__scalar_1ga486680b7d43688e2bcbec959a547ffee" kindref="member">vrna_math_fun_dbl_opt_t</ref></type>
          <declname>cb_preprocess_opt</declname>
        </param>
        <param>
          <type><ref refid="group__math__scalar_1ga8a609e60df9775ae99eb5c29f9bfb7a8" kindref="member">vrna_math_fun_dbl_opt_free_f</ref></type>
          <declname>cb_preprocess_opt_free</declname>
        </param>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/probing/strategy_deigan.h" line="100" column="1" declfile="ViennaRNA/probing/strategy_deigan.h" declline="100" declcolumn="1"/>
      </memberdef>
      <memberdef kind="function" id="group__probing__data__strategy__deigan_1ga83a8ff8d6404614f9d17d37e6244349c" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type><ref refid="group__probing__data_1gae981b94d5dabe6a32cbe74cd5dd7f925" kindref="member">vrna_probing_data_t</ref></type>
        <definition>vrna_probing_data_t vrna_probing_data_deigan_comparative</definition>
        <argsstring>(const double **reactivities, const unsigned int *n, unsigned int n_seq, double *ms, double *bs, unsigned int multi_params)</argsstring>
        <name>vrna_probing_data_deigan_comparative</name>
        <param>
          <type>const double **</type>
          <declname>reactivities</declname>
        </param>
        <param>
          <type>const unsigned int *</type>
          <declname>n</declname>
        </param>
        <param>
          <type>unsigned int</type>
          <declname>n_seq</declname>
        </param>
        <param>
          <type>double *</type>
          <declname>ms</declname>
        </param>
        <param>
          <type>double *</type>
          <declname>bs</declname>
        </param>
        <param>
          <type>unsigned int</type>
          <declname>multi_params</declname>
        </param>
        <briefdescription>
<para>Prepare (multiple) probing data according to Deigan et al. 2009 method for comparative structure predictions. </para>
        </briefdescription>
        <detaileddescription>
<para>Similar to <ref refid="group__probing__data__strategy__deigan_1gacf014a1ab73e49cde659fc441d59e38b" kindref="member">vrna_probing_data_deigan()</ref>, this function prepares a data structure to be used with <ref refid="group__probing__data_1gaea5dded27f3e993c69ff617ff0f09648" kindref="member">vrna_sc_probing()</ref> to directed RNA folding using the simple linear ansatz</para>
<para><formula id="169">\[ \Delta G_{\text{SHAPE}}(i) = m \ln(\text{SHAPE reactivity}(i)+1)+ b \]</formula></para>
<para>to convert probing data, e.g. SHAPE reactivity values, to pseudo energies whenever a nucleotide <formula id="55">$ i $</formula> contributes to a stacked pair. This functions purpose is to allow for adding multiple probing data as required for comparative structure predictions over multiple sequence alignments (MSA) with <computeroutput>n_seq</computeroutput> sequences. For that purpose, <computeroutput>reactivities</computeroutput> can be provided for any of the sequences in the MSA. Individual probing data is always expected to be specified in sequence coordinates, i.e. without considering gaps in the MSA. Therefore, each set of <computeroutput>reactivities</computeroutput> may have a different length as specified the parameter <computeroutput>n</computeroutput>. In addition, each set of probing data may undergo the conversion using different parameters <formula id="170">$ m $</formula> and <formula id="88">$ b $</formula>. Whether or not multiple sets of conversion parameters are provided must be specified using the <computeroutput>multi_params</computeroutput> flag parameter. Use <ref refid="group__probing__data__strategy_1ga06223ef2a11bb23461916bd269081949" kindref="member">VRNA_PROBING_METHOD_MULTI_PARAMS_1</ref> to indicate that <computeroutput>ms</computeroutput> points to an array of slopes for each sequence. Along with that, <ref refid="group__probing__data__strategy_1ga3f95e63f8c11768a4c146b8471296a27" kindref="member">VRNA_PROBING_METHOD_MULTI_PARAMS_2</ref> indicates that <computeroutput>bs</computeroutput> is pointing to an array of intercepts for each sequence. Bitwise-OR of the two values renders both parameters to be sequence specific.</para>
<para><simplesect kind="note"><para>For further details, we refer to  <verbatim>embed:rst:inline  :cite:t:`deigan:2009` </verbatim>.</para>
</simplesect>
<simplesect kind="see"><para><ref refid="group__probing__data_1gae981b94d5dabe6a32cbe74cd5dd7f925" kindref="member">vrna_probing_data_t</ref>, <ref refid="group__probing__data_1ga8c8e987c91b357fd09913f356f5d25da" kindref="member">vrna_probing_data_free()</ref>, <ref refid="group__probing__data_1gaea5dded27f3e993c69ff617ff0f09648" kindref="member">vrna_sc_probing()</ref>, <ref refid="group__probing__data__strategy__deigan_1gacf014a1ab73e49cde659fc441d59e38b" kindref="member">vrna_probing_data_deigan()</ref>, <ref refid="group__probing__data__strategy__zarringhalam_1gaa68eaff93fd3c628ed25ca5fdfc5264b" kindref="member">vrna_probing_data_zarringhalam()</ref>, <ref refid="group__probing__data__strategy__zarringhalam_1ga166a5a5d9f6effde96fc1b79a17a003a" kindref="member">vrna_probing_data_zarringhalam_comparative()</ref>, <ref refid="group__probing__data__strategy__eddy_1ga6238432ed277208b3034b917886e200b" kindref="member">vrna_probing_data_eddy()</ref>, <ref refid="group__probing__data__strategy__eddy_1gab4db5191cddaa5d34861affcab95353d" kindref="member">vrna_probing_data_eddy_comparative()</ref>, <ref refid="group__probing__data__strategy_1gaf5db9deaaa290d8147aaa047fc5116ee" kindref="member">VRNA_PROBING_METHOD_MULTI_PARAMS_0</ref>, <ref refid="group__probing__data__strategy_1ga06223ef2a11bb23461916bd269081949" kindref="member">VRNA_PROBING_METHOD_MULTI_PARAMS_1</ref>, <ref refid="group__probing__data__strategy_1ga3f95e63f8c11768a4c146b8471296a27" kindref="member">VRNA_PROBING_METHOD_MULTI_PARAMS_2</ref>, <ref refid="group__probing__data__strategy_1ga79617a4098fe287edcee01ca0992e3f9" kindref="member">VRNA_PROBING_METHOD_MULTI_PARAMS_DEFAULT</ref></para>
</simplesect>
<parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername>reactivities</parametername>
</parameternamelist>
<parameterdescription>
<para>0-based array of 1-based arrays of per-nucleotide probing data, e.g. SHAPE reactivities </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>n</parametername>
</parameternamelist>
<parameterdescription>
<para>0-based array of lengths of the <computeroutput>reactivities</computeroutput> lists </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>n_seq</parametername>
</parameternamelist>
<parameterdescription>
<para>The number of sequences in the MSA </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>ms</parametername>
</parameternamelist>
<parameterdescription>
<para>0-based array of the slopes used for the probing data to soft constraints conversion strategy or the address of a single slope value to be applied for all data </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>bs</parametername>
</parameternamelist>
<parameterdescription>
<para>0-based array of the intercepts used for the probing data to soft constraints conversion strategy or the address of a single intercept value to be applied for all data </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>multi_params</parametername>
</parameternamelist>
<parameterdescription>
<para>A flag indicating what is passed through parameters <computeroutput>ms</computeroutput> and <computeroutput>bs</computeroutput> </para>
</parameterdescription>
</parameteritem>
</parameterlist>
<simplesect kind="return"><para>A pointer to a data structure containing the probing data and any preparations necessary to use it in <ref refid="group__probing__data_1gaea5dded27f3e993c69ff617ff0f09648" kindref="member">vrna_sc_probing()</ref> according to the method of  <verbatim>embed:rst:inline  :cite:t:`deigan:2009` </verbatim> or <bold>NULL</bold> on any error. </para>
</simplesect>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/probing/strategy_deigan.h" line="152" column="1" declfile="ViennaRNA/probing/strategy_deigan.h" declline="152" declcolumn="1"/>
      </memberdef>
      <memberdef kind="function" id="group__probing__data__strategy__deigan_1ga62934757770e864253f39b2612e27a99" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type><ref refid="group__probing__data_1gae981b94d5dabe6a32cbe74cd5dd7f925" kindref="member">vrna_probing_data_t</ref></type>
        <definition>vrna_probing_data_t vrna_probing_data_deigan_trans_comparative</definition>
        <argsstring>(const double **reactivities, const unsigned int *n, unsigned int n_seq, double *ms, double *bs, unsigned int multi_params, vrna_math_fun_dbl_f *cb_preprocess, vrna_math_fun_dbl_opt_t *cb_preprocess_opt, vrna_math_fun_dbl_opt_free_f *cb_preprocess_opt_free)</argsstring>
        <name>vrna_probing_data_deigan_trans_comparative</name>
        <param>
          <type>const double **</type>
          <declname>reactivities</declname>
        </param>
        <param>
          <type>const unsigned int *</type>
          <declname>n</declname>
        </param>
        <param>
          <type>unsigned int</type>
          <declname>n_seq</declname>
        </param>
        <param>
          <type>double *</type>
          <declname>ms</declname>
        </param>
        <param>
          <type>double *</type>
          <declname>bs</declname>
        </param>
        <param>
          <type>unsigned int</type>
          <declname>multi_params</declname>
        </param>
        <param>
          <type><ref refid="group__math__scalar_1ga868f4010e57fb868ce11804b77f04c2f" kindref="member">vrna_math_fun_dbl_f</ref> *</type>
          <declname>cb_preprocess</declname>
        </param>
        <param>
          <type><ref refid="group__math__scalar_1ga486680b7d43688e2bcbec959a547ffee" kindref="member">vrna_math_fun_dbl_opt_t</ref> *</type>
          <declname>cb_preprocess_opt</declname>
        </param>
        <param>
          <type><ref refid="group__math__scalar_1ga8a609e60df9775ae99eb5c29f9bfb7a8" kindref="member">vrna_math_fun_dbl_opt_free_f</ref> *</type>
          <declname>cb_preprocess_opt_free</declname>
        </param>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/probing/strategy_deigan.h" line="161" column="1" declfile="ViennaRNA/probing/strategy_deigan.h" declline="161" declcolumn="1"/>
      </memberdef>
    </sectiondef>
    <sectiondef kind="define">
      <memberdef kind="define" id="group__probing__data__strategy__deigan_1ga8b922b6927f28ffd655f76ad8b59bdde" prot="public" static="no">
        <name>VRNA_PROBING_METHOD_DEIGAN2009_DEFAULT_m</name>
        <initializer>1.8</initializer>
        <briefdescription>
<para>Default parameter for slope <computeroutput>m</computeroutput> as used in method of  <verbatim>embed:rst:inline  :cite:t:`deigan:2009` </verbatim>. </para>
        </briefdescription>
        <detaileddescription>
<para><simplesect kind="see"><para><ref refid="group__probing__data__strategy__deigan_1gacf014a1ab73e49cde659fc441d59e38b" kindref="member">vrna_probing_data_deigan()</ref>, <ref refid="group__probing__data__strategy__deigan_1ga83a8ff8d6404614f9d17d37e6244349c" kindref="member">vrna_probing_data_deigan_comparative()</ref>, <ref refid="group__probing__data__strategy__deigan_1gaa1e9ca9fd6bf9a013909d919e6823297" kindref="member">VRNA_PROBING_METHOD_DEIGAN2009_DEFAULT_b</ref> </para>
</simplesect>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/probing/strategy_deigan.h" line="26" column="9" bodyfile="ViennaRNA/probing/strategy_deigan.h" bodystart="26" bodyend="-1"/>
      </memberdef>
      <memberdef kind="define" id="group__probing__data__strategy__deigan_1gaa1e9ca9fd6bf9a013909d919e6823297" prot="public" static="no">
        <name>VRNA_PROBING_METHOD_DEIGAN2009_DEFAULT_b</name>
        <initializer>-0.6</initializer>
        <briefdescription>
<para>Default parameter for intercept <computeroutput>b</computeroutput> as used in method of  <verbatim>embed:rst:inline  :cite:t:`deigan:2009` </verbatim>. </para>
        </briefdescription>
        <detaileddescription>
<para><simplesect kind="see"><para><ref refid="group__probing__data__strategy__deigan_1gacf014a1ab73e49cde659fc441d59e38b" kindref="member">vrna_probing_data_deigan()</ref>, <ref refid="group__probing__data__strategy__deigan_1ga83a8ff8d6404614f9d17d37e6244349c" kindref="member">vrna_probing_data_deigan_comparative()</ref>, <ref refid="group__probing__data__strategy__deigan_1ga8b922b6927f28ffd655f76ad8b59bdde" kindref="member">VRNA_PROBING_METHOD_DEIGAN2009_DEFAULT_m</ref> </para>
</simplesect>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/probing/strategy_deigan.h" line="35" column="9" bodyfile="ViennaRNA/probing/strategy_deigan.h" bodystart="35" bodyend="-1"/>
      </memberdef>
    </sectiondef>
    <briefdescription>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
  </compounddef>
</doxygen>
