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    <compoundname>1.8.4_epars.h</compoundname>
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      <memberdef kind="define" id="1_88_84__epars_8h_1a307c72605e3713972b4f4fb2d53ea20e" prot="public" static="no">
        <name>K0</name>
        <initializer>273.15</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="39" column="9" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="39" bodyend="-1"/>
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      <memberdef kind="define" id="1_88_84__epars_8h_1a12c2040f25d8e3a7b9e1c2024c618cb6" prot="public" static="no">
        <name>INF</name>
        <initializer>1000000</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="43" column="10" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="43" bodyend="-1"/>
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      <memberdef kind="define" id="1_88_84__epars_8h_1a5e75221c779d618eab81e096f37e32ce" prot="public" static="no">
        <name>NBPAIRS</name>
        <initializer>7</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="44" column="9" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="44" bodyend="-1"/>
      </memberdef>
      <memberdef kind="define" id="1_88_84__epars_8h_1aba99514484a1d6388a800285ffa8677a" prot="public" static="no">
        <name>NST</name>
        <initializer>0     /* Energy for nonstandard stacked <ref refid="group__struct__utils__deprecated_1ga6341cbb704924824e0236c1dce791032" kindref="member">pairs</ref> */</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="45" column="9" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="45" bodyend="-1"/>
      </memberdef>
      <memberdef kind="define" id="1_88_84__epars_8h_1a397419fc12b37ed479c8abb9d444d843" prot="public" static="no">
        <name>DEF</name>
        <initializer>-50   /* Default terminal mismatch, used for I */</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="46" column="9" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="46" bodyend="-1"/>
      </memberdef>
      <memberdef kind="define" id="1_88_84__epars_8h_1a5e79d53b15366c1b3a441272ab27d8ec" prot="public" static="no">
        <name>NSM</name>
        <initializer>0     /* terminal mismatch for non standard <ref refid="group__struct__utils__deprecated_1ga6341cbb704924824e0236c1dce791032" kindref="member">pairs</ref> */</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="48" column="9" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="48" bodyend="-1"/>
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      <memberdef kind="variable" id="1_88_84__epars_8h_1afac3057a9bffc09b69d87540da1fea3d" prot="public" static="yes" mutable="no">
        <type>double</type>
        <definition>double Tmeasure_184</definition>
        <argsstring></argsstring>
        <name>Tmeasure_184</name>
        <initializer>= 37 + K0</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="50" column="15" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="50" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a996b72072f317c42be45aff7385f6f49" prot="public" static="yes" mutable="no">
        <type>double</type>
        <definition>double lxc37_184</definition>
        <argsstring></argsstring>
        <name>lxc37_184</name>
        <initializer>= 107.856</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="51" column="15" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="51" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1afb1178992fe8826b9492c75b42568bb1" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int stack37_184[NBPAIRS+1][NBPAIRS+1]</definition>
        <argsstring>[NBPAIRS+1][NBPAIRS+1]</argsstring>
        <name>stack37_184</name>
        <initializer>=

{ {  INF,   INF,   INF,   INF,   INF,   INF,   INF, INF},
  {  INF,  -240,  -330,  -210,  -140,  -210,  -210, NST},
  {  INF,  -330,  -340,  -250,  -150,  -220,  -240, NST},
  {  INF,  -210,  -250,   130,   -50,  -140,  -130, NST},
  {  INF,  -140,  -150,   -50,    30,   -60,  -100, NST},
  {  INF,  -210,  -220,  -140,   -60,  -110,   -90, NST},
  {  INF,  -210,  -240,  -130,  -100,   -90,  -130, NST},
  {  INF,   NST,   NST,   NST,   NST,   NST,   NST, NST}}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="54" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="54" bodyend="63"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1af22eb6ac4e3b3eb159920f8cea483db7" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int enthalpies_184[NBPAIRS+1][NBPAIRS+1]</definition>
        <argsstring>[NBPAIRS+1][NBPAIRS+1]</argsstring>
        <name>enthalpies_184</name>
        <initializer>=

{ {  INF,   INF,   INF,   INF,   INF,   INF,   INF, INF},
  {  INF, -1060, -1340, -1210,  -560, -1050, -1040, NST},
  {  INF, -1340, -1490, -1260,  -830, -1140, -1240, NST},
  {  INF, -1210, -1260, -1460, -1350,  -880, -1280, NST},
  {  INF,  -560,  -830, -1350,  -930,  -320,  -700, NST},
  {  INF, -1050, -1140,  -880,  -320,  -940,  -680, NST},
  {  INF, -1040, -1240, -1280,  -700,  -680,  -770, NST},
  {  INF,   NST,   NST,   NST,   NST,   NST,   NST, NST}}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="67" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="67" bodyend="76"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a12b78ed83af004fb3690331480d8bcc1" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int oldhairpin37_184[31]</definition>
        <argsstring>[31]</argsstring>
        <name>oldhairpin37_184</name>
        <initializer>= { 
  INF, INF, INF, 410, 490, 440, 470, 500, 510, 520, 531,
       542, 551, 560, 568, 575, 582, 589, 595, 601, 606,
       611, 616, 621, 626, 630, 634, 638, 642, 646, 650}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="80" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="80" bodyend="83"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a745bec8f4c76dcd444cab4dc760d1e81" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int hairpin37_184[31]</definition>
        <argsstring>[31]</argsstring>
        <name>hairpin37_184</name>
        <initializer>= {
  INF, INF, INF, 570, 560, 560, 540, 590, 560, 640, 650,
       660, 670, 678, 686, 694, 701, 707, 713, 719, 725,
       730, 735, 740, 744, 749, 753, 757, 761, 765, 769}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="85" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="85" bodyend="88"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a127316414d0fa242217690fe20b1b176" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int oldbulge37_184[31]</definition>
        <argsstring>[31]</argsstring>
        <name>oldbulge37_184</name>
        <initializer>= {
  INF, 390, 310, 350, 420, 480, 500, 516, 531, 543, 555,
       565, 574, 583, 591, 598, 605, 612, 618, 624, 630,
       635, 640, 645, 649, 654, 658, 662, 666, 670, 673}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="90" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="90" bodyend="93"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a2c1662092d1e957a801e3ce9403c4a4d" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int bulge37_184[31]</definition>
        <argsstring>[31]</argsstring>
        <name>bulge37_184</name>
        <initializer>= {
  INF, 380, 280, 320, 360, 400, 440, 459, 470, 480, 490,
       500, 510, 519, 527, 534, 541, 548, 554, 560, 565,
  571, 576, 580, 585, 589, 594, 598, 602, 605, 609}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="95" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="95" bodyend="98"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1adedffeb5cfe10a45905ea0f569762e98" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int oldinternal_loop37_184[31]</definition>
        <argsstring>[31]</argsstring>
        <name>oldinternal_loop37_184</name>
        <initializer>= {
  INF, INF, 410, 510, 490, 530, 570, 587, 601, 614, 625,
       635, 645, 653, 661, 669, 676, 682, 688, 694, 700,
       705, 710, 715, 720, 724, 728, 732, 736, 740, 744}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="100" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="100" bodyend="103"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1adf8e5a6e86e6f84e12885585cf64092d" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int internal_loop37_184[31]</definition>
        <argsstring>[31]</argsstring>
        <name>internal_loop37_184</name>
        <initializer>= {
  INF, INF, 410, 510, 170, 180, 200, 220, 230, 240, 250,
       260, 270, 278, 286, 294, 301, 307, 313, 319, 325,
       330, 335, 340, 345, 349, 353, 357, 361, 365, 369}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="105" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="105" bodyend="108"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a5cf78019484f8c5d0c4dad1695106bf0" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int mismatchI37_184[NBPAIRS+1][5][5]</definition>
        <argsstring>[NBPAIRS+1][5][5]</argsstring>
        <name>mismatchI37_184</name>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="112" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="112" bodyend="154"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a2d4038ea4c7f7862882003aea8b5e1f3" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int mismatchH37_184[NBPAIRS+1][5][5]</definition>
        <argsstring>[NBPAIRS+1][5][5]</argsstring>
        <name>mismatchH37_184</name>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="157" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="157" bodyend="199"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a60d0be8fc91960ed4fb9d4e1aad41ae0" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int mismatchM37_184[NBPAIRS+1][5][5]</definition>
        <argsstring>[NBPAIRS+1][5][5]</argsstring>
        <name>mismatchM37_184</name>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="202" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="202" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1aa12038ac6385e30f118386aa6a80bd07" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int mism_H_184[NBPAIRS+1][5][5]</definition>
        <argsstring>[NBPAIRS+1][5][5]</argsstring>
        <name>mism_H_184</name>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="206" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="206" bodyend="248"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a2e7250bc112991efb387e7cab24e87e2" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int dangle5_37_184[NBPAIRS+1][5]</definition>
        <argsstring>[NBPAIRS+1][5]</argsstring>
        <name>dangle5_37_184</name>
        <initializer>=
{
   { INF,  INF,  INF,  INF,  INF}, 
   { INF,  -50,  -30,  -20,  -10}, 
   { INF,  -20,  -30,   -0,   -0}, 
   { INF,  -30,  -30,  -40,  -20}, 
   { INF,  -30,  -10,  -20,  -20}, 
   { INF,  -30,  -30,  -40,  -20}, 
   { INF,  -30,  -10,  -20,  -20}, 
   {   0,    0,     0,    0,   0}  
}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="251" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="251" bodyend="261"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a8824ca112044c1fb4b63dc9f11f90619" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int dangle3_37_184[NBPAIRS+1][5]</definition>
        <argsstring>[NBPAIRS+1][5]</argsstring>
        <name>dangle3_37_184</name>
        <initializer>=
{
   { INF,  INF,  INF,  INF,  INF},  
   { INF, -110,  -40, -130,  -60},  
   { INF, -170,  -80, -170, -120},  
   { INF,  -70,  -10,  -70,  -10},  
   { INF,  -80,  -50,  -80,  -60},  
   { INF,  -70,  -10,  -70,  -10},  
   { INF,  -80,  -50,  -80,  -60},  
   {   0,    0,     0,    0,   0}   
}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="264" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="264" bodyend="274"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a9cc06a2142027cac900b6409c977dfdf" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int dangle3_H_184[NBPAIRS+1][5]</definition>
        <argsstring>[NBPAIRS+1][5]</argsstring>
        <name>dangle3_H_184</name>
        <initializer>=
{
   { INF,  INF,  INF,  INF,  INF},  
   {   0, -740, -280, -640, -360},
   {   0, -900, -410, -860, -750},
   {   0, -740, -240, -720, -490},
   {   0, -490,  -90, -550, -230},
   {   0, -570,  -70, -580, -220},
   {   0, -490,  -90, -550, -230},
   {   0,    0,    0,    0,   0}
}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="277" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="277" bodyend="287"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1ad84344495d3d4551beb171b951e99f01" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int dangle5_H_184[NBPAIRS+1][5]</definition>
        <argsstring>[NBPAIRS+1][5]</argsstring>
        <name>dangle5_H_184</name>
        <initializer>=
{
   { INF,  INF,  INF,  INF,  INF},  
   {   0, -240,  330,   80, -140},
   {   0, -160,   70, -460,  -40},
   {   0,  160,  220,   70,  310},
   {   0, -150,  510,   10,  100},
   {   0,  160,  220,   70,  310},
   {   0,  -50,  690,  -60,  -60},
   {   0,    0,    0,    0,   0}
}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="289" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="289" bodyend="299"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1afea92fca2e3539b2bcc42002c3b6fd80" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int ML_BASE37_184</definition>
        <argsstring></argsstring>
        <name>ML_BASE37_184</name>
        <initializer>= 0</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="305" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="305" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a6f5ba0106d1bc5c341c5cf6a28d34524" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int ML_closing37_184</definition>
        <argsstring></argsstring>
        <name>ML_closing37_184</name>
        <initializer>= 340</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="306" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="306" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a54ce9d4b2fff398690c9fc7d8f2339cf" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int ML_intern37_184</definition>
        <argsstring></argsstring>
        <name>ML_intern37_184</name>
        <initializer>=  40</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="307" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="307" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a4f42de6590796ffde4943e0dfde028b4" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int MAX_NINIO_184</definition>
        <argsstring></argsstring>
        <name>MAX_NINIO_184</name>
        <initializer>= 300</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="311" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="311" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a697db29c3f2c97964f8fcdea9b2c5c33" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int F_ninio37_184[5]</definition>
        <argsstring>[5]</argsstring>
        <name>F_ninio37_184</name>
        <initializer>= { 0, 40, 50, 20, 10 }</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="312" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="312" bodyend="312"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1abc24785145bdd0aae8d2d1eaaf880acb" prot="public" static="yes" mutable="no">
        <type>char</type>
        <definition>char Tetraloops_184[1400]</definition>
        <argsstring>[1400]</argsstring>
        <name>Tetraloops_184</name>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="316" column="13" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="316" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a89fa32bb33fc296f2353ab361ccc48f3" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int TETRA_ENERGY37_184[200]</definition>
        <argsstring>[200]</argsstring>
        <name>TETRA_ENERGY37_184</name>
        <initializer>= {
  -300, -300, -300, -300, -300, -300, -300, -300, -300, -250, -250, -250,
  -250, -250, -200, -200, -200, -200, -200, -150, -150, -150, -150, -150,
  -150, -150, -150, -150, -150, -150}</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="349" column="14" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="349" bodyend="352"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a1e61c815078253c182e4f70e5b2d9987" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int TETRA_ENTH37_184</definition>
        <argsstring></argsstring>
        <name>TETRA_ENTH37_184</name>
        <initializer>= -400</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="354" column="14" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="354" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1aa81750c5d4a330ea3bbaca799b8658a1" prot="public" static="yes" mutable="no">
        <type>char</type>
        <definition>char Triloops_184[241]</definition>
        <argsstring>[241]</argsstring>
        <name>Triloops_184</name>
        <initializer>= &quot;&quot;</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="356" column="13" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="356" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1adc64066fdd214ffef4dc31c32289a8d9" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int Triloop_E37_184[40]</definition>
        <argsstring>[40]</argsstring>
        <name>Triloop_E37_184</name>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="358" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="358" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a80b07f2706d980673ec62f6ecf8621bf" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int TerminalAU_184</definition>
        <argsstring></argsstring>
        <name>TerminalAU_184</name>
        <initializer>= 50</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="362" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="362" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="1_88_84__epars_8h_1a010e8f38b46aa169d1afe47ba68a7c48" prot="public" static="yes" mutable="no">
        <type>int</type>
        <definition>int DuplexInit_184</definition>
        <argsstring></argsstring>
        <name>DuplexInit_184</name>
        <initializer>= 410</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/params/1.8.4_epars.h" line="365" column="12" bodyfile="ViennaRNA/params/1.8.4_epars.h" bodystart="365" bodyend="-1"/>
      </memberdef>
    </sectiondef>
    <briefdescription>
<para>Free energy parameters for parameter file conversion. </para>
    </briefdescription>
    <detaileddescription>
<para>This file contains the free energy parameters used in ViennaRNAPackage 1.8.4. They are summarized in:</para>
<para>D.H.Mathews, J. Sabina, M. ZUker, D.H. Turner &quot;Expanded sequence dependence of thermodynamic parameters improves
prediction of RNA secondary structure&quot; JMB, 288, pp 911-940, 1999</para>
<para>Enthalpies taken from:</para>
<para>A. Walter, D Turner, J Kim, M Lyttle, P M&quot;uller, D Mathews, M Zuker
&quot;Coaxial stckaing of helices enhances binding of oligoribonucleotides..&quot;
PNAS, 91, pp 9218-9222, 1994

D.H. Turner, N. Sugimoto, and S.M. Freier.
&quot;RNA Structure Prediction&quot;,
Ann. Rev. Biophys. Biophys. Chem. 17, 167-192, 1988.

John A.Jaeger, Douglas H.Turner, and Michael Zuker.
&quot;Improved predictions of secondary structures for RNA&quot;,
PNAS, 86, 7706-7710, October 1989.

L. He, R. Kierzek, J. SantaLucia, A.E. Walter, D.H. Turner
&quot;Nearest-Neughbor Parameters for GU Mismatches....&quot;
Biochemistry 1991, 30 11124-11132

A.E. Peritz, R. Kierzek, N, Sugimoto, D.H. Turner
&quot;Thermodynamic Study of Internal Loops in Oligoribonucleotides..." Biochemistry 1991, 30, 6428<ndash/>6435 </para>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_OLD_EPARS__</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_OLD_EPARS__</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="38"><highlight class="normal"></highlight></codeline>
<codeline lineno="39"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>K0<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>273.15</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="40"><highlight class="normal"></highlight><highlight class="preprocessor">#ifdef<sp/>INF</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="41"><highlight class="normal"></highlight><highlight class="preprocessor">#undef<sp/>INF</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="42"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="43"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>INF<sp/><sp/><sp/><sp/><sp/><sp/><sp/>1000000</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="44"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>NBPAIRS<sp/><sp/><sp/>7</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="45"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>NST<sp/><sp/><sp/><sp/><sp/><sp/><sp/>0<sp/><sp/><sp/><sp/><sp/></highlight><highlight class="comment">/*<sp/>Energy<sp/>for<sp/>nonstandard<sp/>stacked<sp/>pairs<sp/>*/</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="46"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>DEF<sp/><sp/><sp/><sp/><sp/><sp/><sp/>-50<sp/><sp/><sp/></highlight><highlight class="comment">/*<sp/>Default<sp/>terminal<sp/>mismatch,<sp/>used<sp/>for<sp/>I<sp/>*/</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="47"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="comment">/*<sp/>and<sp/>any<sp/>non_pairing<sp/>bases<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="48"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>NSM<sp/><sp/><sp/><sp/><sp/><sp/><sp/>0<sp/><sp/><sp/><sp/><sp/></highlight><highlight class="comment">/*<sp/>terminal<sp/>mismatch<sp/>for<sp/>non<sp/>standard<sp/>pairs<sp/>*/</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="49"><highlight class="normal"></highlight></codeline>
<codeline lineno="50"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/>Tmeasure_184<sp/>=<sp/>37<sp/>+<sp/>K0;<sp/><sp/></highlight><highlight class="comment">/*<sp/>temperature<sp/>of<sp/>param<sp/>measurements<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="51"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/>lxc37_184<sp/><sp/><sp/><sp/>=<sp/>107.856;<sp/><sp/></highlight><highlight class="comment">/*<sp/>parameter<sp/>for<sp/>logarithmic<sp/>loop</highlight></codeline>
<codeline lineno="52"><highlight class="comment"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>energy<sp/>extrapolation<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="53"><highlight class="normal"></highlight></codeline>
<codeline lineno="54"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>stack37_184[NBPAIRS+1][NBPAIRS+1]<sp/>=</highlight></codeline>
<codeline lineno="55"><highlight class="normal"></highlight><highlight class="comment">/*<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>CG<sp/><sp/><sp/><sp/><sp/>GC<sp/><sp/><sp/><sp/><sp/>GU<sp/><sp/><sp/><sp/><sp/>UG<sp/><sp/><sp/><sp/><sp/>AU<sp/><sp/><sp/><sp/><sp/>UA<sp/><sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="56"><highlight class="normal">{<sp/>{<sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/>INF},</highlight></codeline>
<codeline lineno="57"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/><sp/>-240,<sp/><sp/>-330,<sp/><sp/>-210,<sp/><sp/>-140,<sp/><sp/>-210,<sp/><sp/>-210,<sp/>NST},</highlight></codeline>
<codeline lineno="58"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/><sp/>-330,<sp/><sp/>-340,<sp/><sp/>-250,<sp/><sp/>-150,<sp/><sp/>-220,<sp/><sp/>-240,<sp/>NST},</highlight></codeline>
<codeline lineno="59"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/><sp/>-210,<sp/><sp/>-250,<sp/><sp/><sp/>130,<sp/><sp/><sp/>-50,<sp/><sp/>-140,<sp/><sp/>-130,<sp/>NST},</highlight></codeline>
<codeline lineno="60"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/><sp/>-140,<sp/><sp/>-150,<sp/><sp/><sp/>-50,<sp/><sp/><sp/><sp/>30,<sp/><sp/><sp/>-60,<sp/><sp/>-100,<sp/>NST},</highlight></codeline>
<codeline lineno="61"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/><sp/>-210,<sp/><sp/>-220,<sp/><sp/>-140,<sp/><sp/><sp/>-60,<sp/><sp/>-110,<sp/><sp/><sp/>-90,<sp/>NST},</highlight></codeline>
<codeline lineno="62"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/><sp/>-210,<sp/><sp/>-240,<sp/><sp/>-130,<sp/><sp/>-100,<sp/><sp/><sp/>-90,<sp/><sp/>-130,<sp/>NST},</highlight></codeline>
<codeline lineno="63"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/>NST}};</highlight></codeline>
<codeline lineno="64"><highlight class="normal"></highlight></codeline>
<codeline lineno="65"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>enthalpies<sp/>(0.01*kcal/mol<sp/>at<sp/>37<sp/>C)<sp/>for<sp/>stacked<sp/>pairs<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="66"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>different<sp/>from<sp/>mfold-2.3,<sp/>which<sp/>uses<sp/>values<sp/>from<sp/>mfold-2.2<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="67"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>enthalpies_184[NBPAIRS+1][NBPAIRS+1]<sp/>=</highlight></codeline>
<codeline lineno="68"><highlight class="normal"></highlight><highlight class="comment">/*<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>CG<sp/><sp/><sp/><sp/><sp/>GC<sp/><sp/><sp/><sp/><sp/>GU<sp/><sp/><sp/><sp/><sp/>UG<sp/><sp/><sp/><sp/><sp/>AU<sp/><sp/><sp/><sp/><sp/>UA<sp/><sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="69"><highlight class="normal">{<sp/>{<sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/><sp/><sp/>INF,<sp/>INF},</highlight></codeline>
<codeline lineno="70"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/>-1060,<sp/>-1340,<sp/>-1210,<sp/><sp/>-560,<sp/>-1050,<sp/>-1040,<sp/>NST},</highlight></codeline>
<codeline lineno="71"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/>-1340,<sp/>-1490,<sp/>-1260,<sp/><sp/>-830,<sp/>-1140,<sp/>-1240,<sp/>NST},</highlight></codeline>
<codeline lineno="72"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/>-1210,<sp/>-1260,<sp/>-1460,<sp/>-1350,<sp/><sp/>-880,<sp/>-1280,<sp/>NST},</highlight></codeline>
<codeline lineno="73"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/><sp/>-560,<sp/><sp/>-830,<sp/>-1350,<sp/><sp/>-930,<sp/><sp/>-320,<sp/><sp/>-700,<sp/>NST},</highlight></codeline>
<codeline lineno="74"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/>-1050,<sp/>-1140,<sp/><sp/>-880,<sp/><sp/>-320,<sp/><sp/>-940,<sp/><sp/>-680,<sp/>NST},</highlight></codeline>
<codeline lineno="75"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/>-1040,<sp/>-1240,<sp/>-1280,<sp/><sp/>-700,<sp/><sp/>-680,<sp/><sp/>-770,<sp/>NST},</highlight></codeline>
<codeline lineno="76"><highlight class="normal"><sp/><sp/>{<sp/><sp/>INF,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/><sp/><sp/>NST,<sp/>NST}};</highlight></codeline>
<codeline lineno="77"><highlight class="normal"></highlight></codeline>
<codeline lineno="78"><highlight class="normal"></highlight></codeline>
<codeline lineno="79"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>old<sp/>values<sp/>are<sp/>here<sp/>just<sp/>for<sp/>comparison<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="80"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>oldhairpin37_184[31]<sp/>=<sp/>{<sp/></highlight><highlight class="comment">/*<sp/>from<sp/>ViennaRNA<sp/>1.3<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="81"><highlight class="normal"><sp/><sp/>INF,<sp/>INF,<sp/>INF,<sp/>410,<sp/>490,<sp/>440,<sp/>470,<sp/>500,<sp/>510,<sp/>520,<sp/>531,</highlight></codeline>
<codeline lineno="82"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>542,<sp/>551,<sp/>560,<sp/>568,<sp/>575,<sp/>582,<sp/>589,<sp/>595,<sp/>601,<sp/>606,</highlight></codeline>
<codeline lineno="83"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>611,<sp/>616,<sp/>621,<sp/>626,<sp/>630,<sp/>634,<sp/>638,<sp/>642,<sp/>646,<sp/>650};</highlight></codeline>
<codeline lineno="84"><highlight class="normal"></highlight></codeline>
<codeline lineno="85"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>hairpin37_184[31]<sp/>=<sp/>{</highlight></codeline>
<codeline lineno="86"><highlight class="normal"><sp/><sp/>INF,<sp/>INF,<sp/>INF,<sp/>570,<sp/>560,<sp/>560,<sp/>540,<sp/>590,<sp/>560,<sp/>640,<sp/>650,</highlight></codeline>
<codeline lineno="87"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>660,<sp/>670,<sp/>678,<sp/>686,<sp/>694,<sp/>701,<sp/>707,<sp/>713,<sp/>719,<sp/>725,</highlight></codeline>
<codeline lineno="88"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>730,<sp/>735,<sp/>740,<sp/>744,<sp/>749,<sp/>753,<sp/>757,<sp/>761,<sp/>765,<sp/>769};</highlight></codeline>
<codeline lineno="89"><highlight class="normal"></highlight></codeline>
<codeline lineno="90"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>oldbulge37_184[31]<sp/>=<sp/>{</highlight></codeline>
<codeline lineno="91"><highlight class="normal"><sp/><sp/>INF,<sp/>390,<sp/>310,<sp/>350,<sp/>420,<sp/>480,<sp/>500,<sp/>516,<sp/>531,<sp/>543,<sp/>555,</highlight></codeline>
<codeline lineno="92"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>565,<sp/>574,<sp/>583,<sp/>591,<sp/>598,<sp/>605,<sp/>612,<sp/>618,<sp/>624,<sp/>630,</highlight></codeline>
<codeline lineno="93"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>635,<sp/>640,<sp/>645,<sp/>649,<sp/>654,<sp/>658,<sp/>662,<sp/>666,<sp/>670,<sp/>673};</highlight></codeline>
<codeline lineno="94"><highlight class="normal"></highlight></codeline>
<codeline lineno="95"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>bulge37_184[31]<sp/>=<sp/>{</highlight></codeline>
<codeline lineno="96"><highlight class="normal"><sp/><sp/>INF,<sp/>380,<sp/>280,<sp/>320,<sp/>360,<sp/>400,<sp/>440,<sp/>459,<sp/>470,<sp/>480,<sp/>490,</highlight></codeline>
<codeline lineno="97"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>500,<sp/>510,<sp/>519,<sp/>527,<sp/>534,<sp/>541,<sp/>548,<sp/>554,<sp/>560,<sp/>565,</highlight></codeline>
<codeline lineno="98"><highlight class="normal"><sp/><sp/>571,<sp/>576,<sp/>580,<sp/>585,<sp/>589,<sp/>594,<sp/>598,<sp/>602,<sp/>605,<sp/>609};</highlight></codeline>
<codeline lineno="99"><highlight class="normal"></highlight></codeline>
<codeline lineno="100"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>oldinternal_loop37_184[31]<sp/>=<sp/>{</highlight></codeline>
<codeline lineno="101"><highlight class="normal"><sp/><sp/>INF,<sp/>INF,<sp/>410,<sp/>510,<sp/>490,<sp/>530,<sp/>570,<sp/>587,<sp/>601,<sp/>614,<sp/>625,</highlight></codeline>
<codeline lineno="102"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>635,<sp/>645,<sp/>653,<sp/>661,<sp/>669,<sp/>676,<sp/>682,<sp/>688,<sp/>694,<sp/>700,</highlight></codeline>
<codeline lineno="103"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>705,<sp/>710,<sp/>715,<sp/>720,<sp/>724,<sp/>728,<sp/>732,<sp/>736,<sp/>740,<sp/>744};</highlight></codeline>
<codeline lineno="104"><highlight class="normal"></highlight></codeline>
<codeline lineno="105"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>internal_loop37_184[31]<sp/>=<sp/>{</highlight></codeline>
<codeline lineno="106"><highlight class="normal"><sp/><sp/>INF,<sp/>INF,<sp/>410,<sp/>510,<sp/>170,<sp/>180,<sp/>200,<sp/>220,<sp/>230,<sp/>240,<sp/>250,</highlight></codeline>
<codeline lineno="107"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>260,<sp/>270,<sp/>278,<sp/>286,<sp/>294,<sp/>301,<sp/>307,<sp/>313,<sp/>319,<sp/>325,</highlight></codeline>
<codeline lineno="108"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>330,<sp/>335,<sp/>340,<sp/>345,<sp/>349,<sp/>353,<sp/>357,<sp/>361,<sp/>365,<sp/>369};</highlight></codeline>
<codeline lineno="109"><highlight class="normal"></highlight></codeline>
<codeline lineno="110"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>terminal<sp/>mismatches<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="111"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>mismatch<sp/>free<sp/>energies<sp/>for<sp/>internal<sp/>loops<sp/>at<sp/>37C<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="112"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>mismatchI37_184[NBPAIRS+1][5][5]<sp/>=</highlight></codeline>
<codeline lineno="113"><highlight class="normal">{<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="114"><highlight class="normal"><sp/><sp/>{{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},</highlight></codeline>
<codeline lineno="115"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>CG<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="116"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="117"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/>-110,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="118"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="119"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-110,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="120"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/>-70}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="121"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>GC<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="122"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="123"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/>-110,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="124"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="125"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-110,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="126"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/>-70}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="127"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="128"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="129"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/>-40,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="130"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="131"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-40,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="132"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/><sp/>0}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="133"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>UG<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="134"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="135"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/>-40,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="136"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="137"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-40,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="138"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/><sp/>0}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="139"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="140"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="141"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/>-40,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="142"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="143"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-40,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="144"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/><sp/>0}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="145"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>UA<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="146"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="147"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/>-40,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="148"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="149"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-40,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="150"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/>70,<sp/><sp/><sp/><sp/>0}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="151"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="152"><highlight class="normal"><sp/><sp/><sp/>{<sp/>90,<sp/>90,<sp/>90,<sp/>90,<sp/>90},{<sp/>90,<sp/>90,<sp/>90,<sp/>90,-20},{<sp/>90,<sp/>90,<sp/>90,<sp/>90,<sp/>90},</highlight></codeline>
<codeline lineno="153"><highlight class="normal"><sp/><sp/><sp/>{<sp/>90,-20,<sp/>90,<sp/>90,<sp/>90},{<sp/>90,<sp/>90,<sp/>90,<sp/>90,<sp/>20}}</highlight></codeline>
<codeline lineno="154"><highlight class="normal">};</highlight></codeline>
<codeline lineno="155"><highlight class="normal"></highlight></codeline>
<codeline lineno="156"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>mismatch<sp/>free<sp/>energies<sp/>for<sp/>hairpins<sp/>at<sp/>37C<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="157"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>mismatchH37_184[NBPAIRS+1][5][5]<sp/>=</highlight></codeline>
<codeline lineno="158"><highlight class="normal">{<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="159"><highlight class="normal"><sp/><sp/>{{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},</highlight></codeline>
<codeline lineno="160"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>CG<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="161"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="162"><highlight class="normal"><sp/><sp/><sp/>{<sp/>-90,<sp/>-150,<sp/>-150,<sp/>-140,<sp/>-180},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="163"><highlight class="normal"><sp/><sp/><sp/>{<sp/>-90,<sp/>-100,<sp/><sp/>-90,<sp/>-290,<sp/><sp/>-80},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="164"><highlight class="normal"><sp/><sp/><sp/>{<sp/>-90,<sp/>-220,<sp/>-200,<sp/>-160,<sp/>-110},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="165"><highlight class="normal"><sp/><sp/><sp/>{<sp/>-90,<sp/>-170,<sp/>-140,<sp/>-180,<sp/>-200}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="166"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>GC<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="167"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="168"><highlight class="normal"><sp/><sp/><sp/>{<sp/>-70,<sp/>-110,<sp/>-150,<sp/>-130,<sp/>-210},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="169"><highlight class="normal"><sp/><sp/><sp/>{<sp/>-70,<sp/>-110,<sp/><sp/>-70,<sp/>-240,<sp/><sp/>-50},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="170"><highlight class="normal"><sp/><sp/><sp/>{<sp/>-70,<sp/>-240,<sp/>-290,<sp/>-140,<sp/>-120},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="171"><highlight class="normal"><sp/><sp/><sp/>{<sp/>-70,<sp/>-190,<sp/>-100,<sp/>-220,<sp/>-150}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="172"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="173"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="174"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/>20,<sp/><sp/>-50,<sp/><sp/>-30,<sp/><sp/>-30},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="175"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-10,<sp/><sp/>-20,<sp/>-150,<sp/><sp/>-20},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="176"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-90,<sp/>-110,<sp/><sp/>-30,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="177"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-30,<sp/><sp/>-30,<sp/><sp/>-40,<sp/>-110}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="178"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>UG<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="179"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="180"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-50,<sp/><sp/>-30,<sp/><sp/>-60,<sp/><sp/>-50},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="181"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-20,<sp/><sp/>-10,<sp/>-170,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="182"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-80,<sp/>-120,<sp/><sp/>-30,<sp/><sp/>-70},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="183"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-60,<sp/><sp/>-10,<sp/><sp/>-60,<sp/><sp/>-80}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="184"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="185"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="186"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-30,<sp/><sp/>-50,<sp/><sp/>-30,<sp/><sp/>-30},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="187"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-10,<sp/><sp/>-20,<sp/>-150,<sp/><sp/>-20},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="188"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-110,<sp/>-120,<sp/><sp/>-20,<sp/><sp/><sp/>20},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="189"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-30,<sp/><sp/>-30,<sp/><sp/>-60,<sp/>-110}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="190"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>UA<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="191"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="192"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-50,<sp/><sp/>-30,<sp/><sp/>-60,<sp/><sp/>-50},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="193"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-20,<sp/><sp/>-10,<sp/>-120,<sp/><sp/><sp/>-0},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="194"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-140,<sp/>-120,<sp/><sp/>-70,<sp/><sp/>-20},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="195"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-30,<sp/><sp/>-10,<sp/><sp/>-50,<sp/><sp/>-80}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="196"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="197"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0},{<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0},{<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0},</highlight></codeline>
<codeline lineno="198"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0},{<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0,<sp/><sp/>0}}</highlight></codeline>
<codeline lineno="199"><highlight class="normal">};</highlight></codeline>
<codeline lineno="200"><highlight class="normal"></highlight></codeline>
<codeline lineno="201"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>mismatch<sp/>energies<sp/>in<sp/>multiloops<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="202"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>mismatchM37_184[NBPAIRS+1][5][5];</highlight></codeline>
<codeline lineno="203"><highlight class="normal"></highlight></codeline>
<codeline lineno="204"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>these<sp/>are<sp/>probably<sp/>junk<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="205"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>mismatch<sp/>enthalpies<sp/>for<sp/>temperature<sp/>scaling<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="206"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>mism_H_184[NBPAIRS+1][5][5]<sp/>=</highlight></codeline>
<codeline lineno="207"><highlight class="normal">{<sp/></highlight><highlight class="comment">/*<sp/>no<sp/>pair<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="208"><highlight class="normal"><sp/><sp/>{{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0},{0,0,0,0,0}},</highlight></codeline>
<codeline lineno="209"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>CG<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="210"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="211"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,-1030,<sp/>-950,-1030,-1030},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="212"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-520,<sp/>-450,<sp/>-520,<sp/>-670},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="213"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-940,<sp/>-940,<sp/>-940,<sp/>-940},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="214"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-810,<sp/>-740,<sp/>-810,<sp/>-860}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="215"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>GC<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="216"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="217"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-520,<sp/>-880,<sp/>-560,<sp/>-880},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="218"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-720,<sp/>-310,<sp/>-310,<sp/>-390},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="219"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-710,<sp/>-740,<sp/>-620,<sp/>-740},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="220"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-500,<sp/>-500,<sp/>-500,<sp/>-570}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="221"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="222"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="223"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-430,<sp/>-600,<sp/>-600,<sp/>-600},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="224"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-260,<sp/>-240,<sp/>-240,<sp/>-240},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="225"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-340,<sp/>-690,<sp/>-690,<sp/>-690},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="226"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-330,<sp/>-330,<sp/>-330,<sp/>-330}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="227"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>UG<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="228"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="229"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-720,<sp/>-790,<sp/>-960,<sp/>-810},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="230"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-480,<sp/>-480,<sp/>-360,<sp/>-480},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="231"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-660,<sp/>-810,<sp/>-920,<sp/>-810},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="232"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-550,<sp/>-440,<sp/>-550,<sp/>-360}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="233"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="234"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="235"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-430,<sp/>-600,<sp/>-600,<sp/>-600},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="236"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-260,<sp/>-240,<sp/>-240,<sp/>-240},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="237"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-340,<sp/>-690,<sp/>-690,<sp/>-690},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="238"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-330,<sp/>-330,<sp/>-330,<sp/>-330}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="239"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>UA<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="240"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0},<sp/></highlight><highlight class="comment">/*<sp/>@@<sp/><sp/>@A<sp/><sp/>@C<sp/><sp/>@G<sp/><sp/>@U<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="241"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-400,<sp/>-630,<sp/>-890,<sp/>-590},<sp/></highlight><highlight class="comment">/*<sp/>A@<sp/><sp/>AA<sp/><sp/>AC<sp/><sp/>AG<sp/><sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="242"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-430,<sp/>-510,<sp/>-200,<sp/>-180},<sp/></highlight><highlight class="comment">/*<sp/>C@<sp/><sp/>CA<sp/><sp/>CC<sp/><sp/>CG<sp/><sp/>CU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="243"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-380,<sp/>-680,<sp/>-890,<sp/>-680},<sp/></highlight><highlight class="comment">/*<sp/>G@<sp/><sp/>GA<sp/><sp/>GC<sp/><sp/>GG<sp/><sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="244"><highlight class="normal"><sp/><sp/><sp/>{<sp/>DEF,<sp/>-280,<sp/>-140,<sp/>-280,<sp/>-140}},</highlight><highlight class="comment">/*<sp/>U@<sp/><sp/>UA<sp/><sp/>UC<sp/><sp/>UG<sp/><sp/>UU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="245"><highlight class="normal"><sp/><sp/>{<sp/></highlight><highlight class="comment">/*<sp/>nonstandard<sp/>pair<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="246"><highlight class="normal"><sp/><sp/><sp/>{DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF},</highlight></codeline>
<codeline lineno="247"><highlight class="normal"><sp/><sp/><sp/>{DEF,DEF,DEF,DEF,DEF},{DEF,DEF,DEF,DEF,DEF}}</highlight></codeline>
<codeline lineno="248"><highlight class="normal">};</highlight></codeline>
<codeline lineno="249"><highlight class="normal"></highlight></codeline>
<codeline lineno="250"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>5&apos;<sp/>dangling<sp/>ends<sp/>(unpaird<sp/>base<sp/>stacks<sp/>on<sp/>first<sp/>paired<sp/>base)<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="251"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>dangle5_37_184[NBPAIRS+1][5]=</highlight></codeline>
<codeline lineno="252"><highlight class="normal">{</highlight><highlight class="comment">/*<sp/><sp/><sp/>@<sp/><sp/><sp/><sp/><sp/>A<sp/><sp/><sp/><sp/><sp/>C<sp/><sp/><sp/><sp/><sp/>G<sp/><sp/><sp/><sp/><sp/>U<sp/><sp/><sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="253"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF},<sp/></highlight><highlight class="comment">/*<sp/>no<sp/>pair<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="254"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-50,<sp/><sp/>-30,<sp/><sp/>-20,<sp/><sp/>-10},<sp/></highlight><highlight class="comment">/*<sp/>CG<sp/><sp/>(stacks<sp/>on<sp/>C)<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="255"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-20,<sp/><sp/>-30,<sp/><sp/><sp/>-0,<sp/><sp/><sp/>-0},<sp/></highlight><highlight class="comment">/*<sp/>GC<sp/><sp/>(stacks<sp/>on<sp/>G)<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="256"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-30,<sp/><sp/>-30,<sp/><sp/>-40,<sp/><sp/>-20},<sp/></highlight><highlight class="comment">/*<sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="257"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-30,<sp/><sp/>-10,<sp/><sp/>-20,<sp/><sp/>-20},<sp/></highlight><highlight class="comment">/*<sp/>UG<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="258"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-30,<sp/><sp/>-30,<sp/><sp/>-40,<sp/><sp/>-20},<sp/></highlight><highlight class="comment">/*<sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="259"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-30,<sp/><sp/>-10,<sp/><sp/>-20,<sp/><sp/>-20},<sp/></highlight><highlight class="comment">/*<sp/>UA<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="260"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/>0}<sp/><sp/></highlight><highlight class="comment">/*<sp/><sp/>@<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="261"><highlight class="normal">};</highlight></codeline>
<codeline lineno="262"><highlight class="normal"></highlight></codeline>
<codeline lineno="263"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>3&apos;<sp/>dangling<sp/>ends<sp/>(unpaired<sp/>base<sp/>stacks<sp/>on<sp/>second<sp/>paired<sp/>base<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="264"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>dangle3_37_184[NBPAIRS+1][5]=</highlight></codeline>
<codeline lineno="265"><highlight class="normal">{</highlight><highlight class="comment">/*<sp/><sp/><sp/>@<sp/><sp/><sp/><sp/><sp/>A<sp/><sp/><sp/><sp/><sp/>C<sp/><sp/><sp/><sp/><sp/>G<sp/><sp/><sp/><sp/><sp/>U<sp/><sp/><sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="266"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF},<sp/><sp/></highlight><highlight class="comment">/*<sp/>no<sp/>pair<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="267"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/>-110,<sp/><sp/>-40,<sp/>-130,<sp/><sp/>-60},<sp/><sp/></highlight><highlight class="comment">/*<sp/>CG<sp/><sp/>(stacks<sp/>on<sp/>G)<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="268"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/>-170,<sp/><sp/>-80,<sp/>-170,<sp/>-120},<sp/><sp/></highlight><highlight class="comment">/*<sp/>GC<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="269"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-70,<sp/><sp/>-10,<sp/><sp/>-70,<sp/><sp/>-10},<sp/><sp/></highlight><highlight class="comment">/*<sp/>GU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="270"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-80,<sp/><sp/>-50,<sp/><sp/>-80,<sp/><sp/>-60},<sp/><sp/></highlight><highlight class="comment">/*<sp/>UG<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="271"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-70,<sp/><sp/>-10,<sp/><sp/>-70,<sp/><sp/>-10},<sp/><sp/></highlight><highlight class="comment">/*<sp/>AU<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="272"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>-80,<sp/><sp/>-50,<sp/><sp/>-80,<sp/><sp/>-60},<sp/><sp/></highlight><highlight class="comment">/*<sp/>UA<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="273"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/>0}<sp/><sp/><sp/></highlight><highlight class="comment">/*<sp/><sp/>@<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="274"><highlight class="normal">};</highlight></codeline>
<codeline lineno="275"><highlight class="normal"></highlight></codeline>
<codeline lineno="276"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>enthalpies<sp/>for<sp/>temperature<sp/>scaling<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="277"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>dangle3_H_184[NBPAIRS+1][5]<sp/>=</highlight></codeline>
<codeline lineno="278"><highlight class="normal">{</highlight><highlight class="comment">/*<sp/><sp/><sp/>@<sp/><sp/><sp/><sp/><sp/>A<sp/><sp/><sp/><sp/><sp/>C<sp/><sp/><sp/><sp/><sp/>G<sp/><sp/><sp/><sp/><sp/>U<sp/><sp/><sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="279"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF},<sp/><sp/></highlight><highlight class="comment">/*<sp/>no<sp/>pair<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="280"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-740,<sp/>-280,<sp/>-640,<sp/>-360},</highlight></codeline>
<codeline lineno="281"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-900,<sp/>-410,<sp/>-860,<sp/>-750},</highlight></codeline>
<codeline lineno="282"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-740,<sp/>-240,<sp/>-720,<sp/>-490},</highlight></codeline>
<codeline lineno="283"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-490,<sp/><sp/>-90,<sp/>-550,<sp/>-230},</highlight></codeline>
<codeline lineno="284"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-570,<sp/><sp/>-70,<sp/>-580,<sp/>-220},</highlight></codeline>
<codeline lineno="285"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-490,<sp/><sp/>-90,<sp/>-550,<sp/>-230},</highlight></codeline>
<codeline lineno="286"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/>0}</highlight></codeline>
<codeline lineno="287"><highlight class="normal">};</highlight></codeline>
<codeline lineno="288"><highlight class="normal"></highlight></codeline>
<codeline lineno="289"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>dangle5_H_184[NBPAIRS+1][5]<sp/>=</highlight></codeline>
<codeline lineno="290"><highlight class="normal">{</highlight><highlight class="comment">/*<sp/><sp/><sp/>@<sp/><sp/><sp/><sp/><sp/>A<sp/><sp/><sp/><sp/><sp/>C<sp/><sp/><sp/><sp/><sp/>G<sp/><sp/><sp/><sp/><sp/>U<sp/><sp/><sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="291"><highlight class="normal"><sp/><sp/><sp/>{<sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF,<sp/><sp/>INF},<sp/><sp/></highlight><highlight class="comment">/*<sp/>no<sp/>pair<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="292"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-240,<sp/><sp/>330,<sp/><sp/><sp/>80,<sp/>-140},</highlight></codeline>
<codeline lineno="293"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-160,<sp/><sp/><sp/>70,<sp/>-460,<sp/><sp/>-40},</highlight></codeline>
<codeline lineno="294"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>160,<sp/><sp/>220,<sp/><sp/><sp/>70,<sp/><sp/>310},</highlight></codeline>
<codeline lineno="295"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/>-150,<sp/><sp/>510,<sp/><sp/><sp/>10,<sp/><sp/>100},</highlight></codeline>
<codeline lineno="296"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>160,<sp/><sp/>220,<sp/><sp/><sp/>70,<sp/><sp/>310},</highlight></codeline>
<codeline lineno="297"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/>-50,<sp/><sp/>690,<sp/><sp/>-60,<sp/><sp/>-60},</highlight></codeline>
<codeline lineno="298"><highlight class="normal"><sp/><sp/><sp/>{<sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/><sp/>0,<sp/><sp/><sp/>0}</highlight></codeline>
<codeline lineno="299"><highlight class="normal">};</highlight></codeline>
<codeline lineno="300"><highlight class="normal"></highlight></codeline>
<codeline lineno="301"><highlight class="normal"></highlight></codeline>
<codeline lineno="302"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>constants<sp/>for<sp/>linearly<sp/>destabilizing<sp/>contributions<sp/>for<sp/>multi-loops</highlight></codeline>
<codeline lineno="303"><highlight class="comment"><sp/><sp/><sp/>F<sp/>=<sp/>ML_closing<sp/>+<sp/>ML_intern*k<sp/>+<sp/>ML_BASE*u<sp/><sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="304"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>old<sp/>versions<sp/>erroneously<sp/>used<sp/>ML_intern*(k-1)<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="305"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>ML_BASE37_184<sp/>=<sp/>0;</highlight></codeline>
<codeline lineno="306"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>ML_closing37_184<sp/>=<sp/>340;</highlight></codeline>
<codeline lineno="307"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>ML_intern37_184<sp/>=<sp/><sp/>40;</highlight></codeline>
<codeline lineno="308"><highlight class="normal"></highlight></codeline>
<codeline lineno="309"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>Ninio-correction<sp/>for<sp/>asymmetric<sp/>internal<sp/>loops<sp/>with<sp/>branches<sp/>n1<sp/>and<sp/>n2<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="310"><highlight class="normal"></highlight><highlight class="comment">/*<sp/><sp/><sp/><sp/>ninio_energy<sp/>=<sp/>min{max_ninio,<sp/>|n1-n2|*F_ninio[min{4.0,<sp/>n1,<sp/>n2}]<sp/>}<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="311"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>MAX_NINIO_184<sp/>=<sp/>300;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="comment">/*<sp/>maximum<sp/>correction<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="312"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>F_ninio37_184[5]<sp/>=<sp/>{<sp/>0,<sp/>40,<sp/>50,<sp/>20,<sp/>10<sp/>};<sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="comment">/*<sp/>only<sp/>F[2]<sp/>used<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="313"><highlight class="normal"></highlight></codeline>
<codeline lineno="314"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>stabilizing<sp/>contribution<sp/>due<sp/>to<sp/>special<sp/>hairpins<sp/>of<sp/>size<sp/>4<sp/>(tetraloops)<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="315"><highlight class="normal"></highlight></codeline>
<codeline lineno="316"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>Tetraloops_184[1400]<sp/>=<sp/><sp/></highlight><highlight class="comment">/*<sp/>place<sp/>for<sp/>up<sp/>to<sp/>200<sp/>tetra<sp/>loops<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="317"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GGGGAC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="318"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GGUGAC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="319"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CGAAAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="320"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GGAGAC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="321"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CGCAAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="322"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GGAAAC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="323"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CGGAAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="324"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CUUCGG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="325"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CGUGAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="326"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CGAAGG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="327"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CUACGG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="328"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GGCAAC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="329"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CGCGAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="330"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;UGAGAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="331"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CGAGAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="332"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;AGAAAU<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="333"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CGUAAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="334"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CUAACG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="335"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;UGAAAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="336"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GGAAGC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="337"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GGGAAC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="338"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;UGAAAA<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="339"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;AGCAAU<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="340"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;AGUAAU<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="341"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;CGGGAG<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="342"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;AGUGAU<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="343"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GGCGAC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="344"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GGGAGC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="345"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;GUGAAC<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="346"><highlight class="normal"><sp/><sp/></highlight><highlight class="stringliteral">&quot;UGGAAA<sp/>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="347"><highlight class="normal">;</highlight></codeline>
<codeline lineno="348"><highlight class="normal"></highlight></codeline>
<codeline lineno="349"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/>TETRA_ENERGY37_184[200]<sp/>=<sp/>{</highlight></codeline>
<codeline lineno="350"><highlight class="normal"><sp/><sp/>-300,<sp/>-300,<sp/>-300,<sp/>-300,<sp/>-300,<sp/>-300,<sp/>-300,<sp/>-300,<sp/>-300,<sp/>-250,<sp/>-250,<sp/>-250,</highlight></codeline>
<codeline lineno="351"><highlight class="normal"><sp/><sp/>-250,<sp/>-250,<sp/>-200,<sp/>-200,<sp/>-200,<sp/>-200,<sp/>-200,<sp/>-150,<sp/>-150,<sp/>-150,<sp/>-150,<sp/>-150,</highlight></codeline>
<codeline lineno="352"><highlight class="normal"><sp/><sp/>-150,<sp/>-150,<sp/>-150,<sp/>-150,<sp/>-150,<sp/>-150};</highlight></codeline>
<codeline lineno="353"><highlight class="normal"></highlight></codeline>
<codeline lineno="354"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/>TETRA_ENTH37_184<sp/><sp/><sp/>=<sp/>-400;</highlight></codeline>
<codeline lineno="355"><highlight class="normal"></highlight></codeline>
<codeline lineno="356"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>Triloops_184[241]<sp/>=<sp/></highlight><highlight class="stringliteral">&quot;&quot;</highlight><highlight class="normal">;</highlight></codeline>
<codeline lineno="357"><highlight class="normal"></highlight></codeline>
<codeline lineno="358"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>Triloop_E37_184[40];</highlight></codeline>
<codeline lineno="359"><highlight class="normal"></highlight></codeline>
<codeline lineno="360"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>penalty<sp/>for<sp/>AU<sp/>(or<sp/>GU)<sp/>terminating<sp/>helix)<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="361"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>mismatches<sp/>already<sp/>contain<sp/>these<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="362"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>TerminalAU_184<sp/>=<sp/>50;</highlight></codeline>
<codeline lineno="363"><highlight class="normal"></highlight></codeline>
<codeline lineno="364"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>penalty<sp/>for<sp/>forming<sp/>a<sp/>bi-molecular<sp/>duplex<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="365"><highlight class="normal">PRIVATE<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>DuplexInit_184<sp/>=<sp/>410;</highlight></codeline>
<codeline lineno="366"><highlight class="normal"></highlight></codeline>
<codeline lineno="367"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/params/1.8.4_epars.h"/>
  </compounddef>
</doxygen>
