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    <sectiondef kind="func">
      <member refid="group__combinatorics__utils_1gae081ac655a76bd5c4b3d86c60b096b75" kind="function"><name>vrna_enumerate_necklaces</name></member>
      <member refid="group__combinatorics__utils_1gac51464b5281833a58c25f9447252c495" kind="function"><name>vrna_rotational_symmetry_num</name></member>
      <member refid="group__combinatorics__utils_1ga95b5a6ac35da982e2a766f8d2f98a2e1" kind="function"><name>vrna_rotational_symmetry_pos_num</name></member>
      <member refid="group__combinatorics__utils_1gae1dec02c4b63f303ce06a9293d316762" kind="function"><name>vrna_rotational_symmetry</name></member>
      <member refid="group__combinatorics__utils_1ga294d48935fcac87ab335d771fe289ecb" kind="function"><name>vrna_rotational_symmetry_pos</name></member>
      <member refid="group__combinatorics__utils_1gad42ffd53025bed9d636d811748db7c5a" kind="function"><name>vrna_rotational_symmetry_db</name></member>
      <member refid="group__combinatorics__utils_1ga2a4227ebe28dbc7ad55444a3a1bf7119" kind="function"><name>vrna_rotational_symmetry_db_pos</name></member>
      <member refid="group__combinatorics__utils_1ga1eabc2f2017426376016554f09bb64a5" kind="function"><name>vrna_n_multichoose_k</name></member>
      <member refid="group__combinatorics__utils_1gad07a7bdc53226e00cdcadb50160873d9" kind="function"><name>vrna_boustrophedon</name></member>
      <member refid="group__combinatorics__utils_1ga9093b53bb7eaaa9b5a8972ac87082d32" kind="function"><name>vrna_boustrophedon_pos</name></member>
    </sectiondef>
    <briefdescription>
<para>Various implementations that deal with combinatorial aspects of objects. </para>
    </briefdescription>
    <detaileddescription>
<para>, </para>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_COMBINATORICS_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_COMBINATORICS_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight></codeline>
<codeline lineno="10"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="fold__compound_8h" kindref="compound">ViennaRNA/fold_compound.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="11"><highlight class="normal"></highlight></codeline>
<codeline lineno="17"><highlight class="normal"></highlight></codeline>
<codeline lineno="33"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**</highlight></codeline>
<codeline lineno="34" refid="group__combinatorics__utils_1gae081ac655a76bd5c4b3d86c60b096b75" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1gae081ac655a76bd5c4b3d86c60b096b75" kindref="member">vrna_enumerate_necklaces</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*type_counts);</highlight></codeline>
<codeline lineno="35"><highlight class="normal"></highlight></codeline>
<codeline lineno="36"><highlight class="normal"></highlight></codeline>
<codeline lineno="56"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="57" refid="group__combinatorics__utils_1gac51464b5281833a58c25f9447252c495" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1gac51464b5281833a58c25f9447252c495" kindref="member">vrna_rotational_symmetry_num</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">,</highlight></codeline>
<codeline lineno="58"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>string_length);</highlight></codeline>
<codeline lineno="59"><highlight class="normal"></highlight></codeline>
<codeline lineno="60"><highlight class="normal"></highlight></codeline>
<codeline lineno="87"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="88" refid="group__combinatorics__utils_1ga95b5a6ac35da982e2a766f8d2f98a2e1" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1ga95b5a6ac35da982e2a766f8d2f98a2e1" kindref="member">vrna_rotational_symmetry_pos_num</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">,</highlight></codeline>
<codeline lineno="89"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>string_length,</highlight></codeline>
<codeline lineno="90"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**positions);</highlight></codeline>
<codeline lineno="91"><highlight class="normal"></highlight></codeline>
<codeline lineno="92"><highlight class="normal"></highlight></codeline>
<codeline lineno="110"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="111" refid="group__combinatorics__utils_1gae1dec02c4b63f303ce06a9293d316762" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1gae1dec02c4b63f303ce06a9293d316762" kindref="member">vrna_rotational_symmetry</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="112"><highlight class="normal"></highlight></codeline>
<codeline lineno="113"><highlight class="normal"></highlight></codeline>
<codeline lineno="138"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="139" refid="group__combinatorics__utils_1ga294d48935fcac87ab335d771fe289ecb" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1ga294d48935fcac87ab335d771fe289ecb" kindref="member">vrna_rotational_symmetry_pos</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">,</highlight></codeline>
<codeline lineno="140"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**positions);</highlight></codeline>
<codeline lineno="141"><highlight class="normal"></highlight></codeline>
<codeline lineno="142"><highlight class="normal"></highlight></codeline>
<codeline lineno="165"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="166" refid="group__combinatorics__utils_1gad42ffd53025bed9d636d811748db7c5a" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1gad42ffd53025bed9d636d811748db7c5a" kindref="member">vrna_rotational_symmetry_db</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="167"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*structure);</highlight></codeline>
<codeline lineno="168"><highlight class="normal"></highlight></codeline>
<codeline lineno="169"><highlight class="normal"></highlight></codeline>
<codeline lineno="200"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="201" refid="group__combinatorics__utils_1ga2a4227ebe28dbc7ad55444a3a1bf7119" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1ga2a4227ebe28dbc7ad55444a3a1bf7119" kindref="member">vrna_rotational_symmetry_db_pos</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="202"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*structure,</highlight></codeline>
<codeline lineno="203"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**positions);</highlight></codeline>
<codeline lineno="204"><highlight class="normal"></highlight></codeline>
<codeline lineno="205"><highlight class="normal"></highlight></codeline>
<codeline lineno="218"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**</highlight></codeline>
<codeline lineno="219" refid="group__combinatorics__utils_1ga1eabc2f2017426376016554f09bb64a5" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1ga1eabc2f2017426376016554f09bb64a5" kindref="member">vrna_n_multichoose_k</ref>(</highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/>n,</highlight></codeline>
<codeline lineno="220"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/>k);</highlight></codeline>
<codeline lineno="221"><highlight class="normal"></highlight></codeline>
<codeline lineno="222"><highlight class="normal"></highlight></codeline>
<codeline lineno="245"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*</highlight></codeline>
<codeline lineno="246" refid="group__combinatorics__utils_1gad07a7bdc53226e00cdcadb50160873d9" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1gad07a7bdc53226e00cdcadb50160873d9" kindref="member">vrna_boustrophedon</ref>(</highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/>start,</highlight></codeline>
<codeline lineno="247"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/>end);</highlight></codeline>
<codeline lineno="248"><highlight class="normal"></highlight></codeline>
<codeline lineno="249"><highlight class="normal"></highlight></codeline>
<codeline lineno="261"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="262" refid="group__combinatorics__utils_1ga9093b53bb7eaaa9b5a8972ac87082d32" refkind="member"><highlight class="normal"><ref refid="group__combinatorics__utils_1ga9093b53bb7eaaa9b5a8972ac87082d32" kindref="member">vrna_boustrophedon_pos</ref>(</highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/>start,</highlight></codeline>
<codeline lineno="263"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/>end,</highlight></codeline>
<codeline lineno="264"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/>pos);</highlight></codeline>
<codeline lineno="265"><highlight class="normal"></highlight></codeline>
<codeline lineno="266"><highlight class="normal"></highlight></codeline>
<codeline lineno="270"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/combinatorics/basic.h"/>
  </compounddef>
</doxygen>
