<?xml version='1.0' encoding='UTF-8' standalone='no'?>
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  <compounddef id="convert_8h" kind="file" language="C++">
    <compoundname>convert.h</compoundname>
    <includedby refid="convert__epars_8h" local="no">ViennaRNA/convert_epars.h</includedby>
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      <node id="2">
        <label>ViennaRNA/convert_epars.h</label>
        <link refid="convert__epars_8h"/>
      </node>
      <node id="1">
        <label>ViennaRNA/params/convert.h</label>
        <link refid="convert_8h"/>
        <childnode refid="2" relation="include">
        </childnode>
      </node>
    </invincdepgraph>
    <sectiondef kind="define">
      <member refid="group__energy__parameters__convert_1ga8dc6aee5a806c49b71557152f9616bc4" kind="define"><name>VRNA_CONVERT_OUTPUT_ALL</name></member>
      <member refid="group__energy__parameters__convert_1gaf66fe2cb11dfcfd32d791049c254a8a4" kind="define"><name>VRNA_CONVERT_OUTPUT_HP</name></member>
      <member refid="group__energy__parameters__convert_1gad23522d63f8d4c50d5a5deee9bee3ef2" kind="define"><name>VRNA_CONVERT_OUTPUT_STACK</name></member>
      <member refid="group__energy__parameters__convert_1gaa892c7b4957459090f3e08da298cc347" kind="define"><name>VRNA_CONVERT_OUTPUT_MM_HP</name></member>
      <member refid="group__energy__parameters__convert_1ga4ff223fb1f9c62cd92d9ab811ad03d55" kind="define"><name>VRNA_CONVERT_OUTPUT_MM_INT</name></member>
      <member refid="group__energy__parameters__convert_1gaf5d3743219f83c6348155cd81e755bbb" kind="define"><name>VRNA_CONVERT_OUTPUT_MM_INT_1N</name></member>
      <member refid="group__energy__parameters__convert_1ga78382ec622ba99e0ac2262317bdd7316" kind="define"><name>VRNA_CONVERT_OUTPUT_MM_INT_23</name></member>
      <member refid="group__energy__parameters__convert_1gae67af9f1cdf7baf2865481282a5d1034" kind="define"><name>VRNA_CONVERT_OUTPUT_MM_MULTI</name></member>
      <member refid="group__energy__parameters__convert_1gaf14ead7ef1fdbe725ade653750fc51e3" kind="define"><name>VRNA_CONVERT_OUTPUT_MM_EXT</name></member>
      <member refid="group__energy__parameters__convert_1ga036ffd996d8c8a9acf631760dd1da24b" kind="define"><name>VRNA_CONVERT_OUTPUT_DANGLE5</name></member>
      <member refid="group__energy__parameters__convert_1ga34a8a5479ef885834ef32f3fb43d79bc" kind="define"><name>VRNA_CONVERT_OUTPUT_DANGLE3</name></member>
      <member refid="group__energy__parameters__convert_1ga079aafefd5f8ab57ee5120099a34bd25" kind="define"><name>VRNA_CONVERT_OUTPUT_INT_11</name></member>
      <member refid="group__energy__parameters__convert_1gacf770881d9034431ebe741642342a1f9" kind="define"><name>VRNA_CONVERT_OUTPUT_INT_21</name></member>
      <member refid="group__energy__parameters__convert_1gaa307671e2631cdacad9cbe4c6583b05f" kind="define"><name>VRNA_CONVERT_OUTPUT_INT_22</name></member>
      <member refid="group__energy__parameters__convert_1ga7092fe0be4de6f02cc0bf08e81af726a" kind="define"><name>VRNA_CONVERT_OUTPUT_BULGE</name></member>
      <member refid="group__energy__parameters__convert_1gac5c2289fdf8ff1b980976d1613ff943a" kind="define"><name>VRNA_CONVERT_OUTPUT_INT</name></member>
      <member refid="group__energy__parameters__convert_1gaf2c8755d64eff3852aa45df9ac80a4fe" kind="define"><name>VRNA_CONVERT_OUTPUT_ML</name></member>
      <member refid="group__energy__parameters__convert_1ga46d5b1535ae86060b6317565b7c6b40b" kind="define"><name>VRNA_CONVERT_OUTPUT_MISC</name></member>
      <member refid="group__energy__parameters__convert_1gaa1ff48a79642d69579d1766561ec6db6" kind="define"><name>VRNA_CONVERT_OUTPUT_SPECIAL_HP</name></member>
      <member refid="group__energy__parameters__convert_1ga0d4e8a836bb4864ab5129c085dbf592d" kind="define"><name>VRNA_CONVERT_OUTPUT_VANILLA</name></member>
      <member refid="group__energy__parameters__convert_1ga2eb0462f16939ddacdaf751a88d675ce" kind="define"><name>VRNA_CONVERT_OUTPUT_NINIO</name></member>
      <member refid="group__energy__parameters__convert_1gac86976e9c2a55b3a6481ea60044f6098" kind="define"><name>VRNA_CONVERT_OUTPUT_DUMP</name></member>
    </sectiondef>
    <sectiondef kind="func">
      <member refid="group__energy__parameters__convert_1gafbe538bc4eb2cf2a33326e1010005f8a" kind="function"><name>convert_parameter_file</name></member>
    </sectiondef>
    <briefdescription>
<para>Functions and definitions for energy parameter file format conversion. </para>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_PARAMS_CONVERT_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_PARAMS_CONVERT_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight></codeline>
<codeline lineno="14"><highlight class="normal"></highlight></codeline>
<codeline lineno="16" refid="group__energy__parameters__convert_1ga8dc6aee5a806c49b71557152f9616bc4" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_ALL<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>1U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="18" refid="group__energy__parameters__convert_1gaf66fe2cb11dfcfd32d791049c254a8a4" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_HP<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>2U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="20" refid="group__energy__parameters__convert_1gad23522d63f8d4c50d5a5deee9bee3ef2" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_STACK<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>4U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="22" refid="group__energy__parameters__convert_1gaa892c7b4957459090f3e08da298cc347" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_MM_HP<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>8U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="24" refid="group__energy__parameters__convert_1ga4ff223fb1f9c62cd92d9ab811ad03d55" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_MM_INT<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>16U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="26" refid="group__energy__parameters__convert_1gaf5d3743219f83c6348155cd81e755bbb" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_MM_INT_1N<sp/><sp/><sp/><sp/><sp/>32U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="28" refid="group__energy__parameters__convert_1ga78382ec622ba99e0ac2262317bdd7316" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_MM_INT_23<sp/><sp/><sp/><sp/><sp/>64U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="30" refid="group__energy__parameters__convert_1gae67af9f1cdf7baf2865481282a5d1034" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_MM_MULTI<sp/><sp/><sp/><sp/><sp/><sp/>128U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="32" refid="group__energy__parameters__convert_1gaf14ead7ef1fdbe725ade653750fc51e3" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_MM_EXT<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>256U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="34" refid="group__energy__parameters__convert_1ga036ffd996d8c8a9acf631760dd1da24b" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_DANGLE5<sp/><sp/><sp/><sp/><sp/><sp/><sp/>512U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="36" refid="group__energy__parameters__convert_1ga34a8a5479ef885834ef32f3fb43d79bc" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_DANGLE3<sp/><sp/><sp/><sp/><sp/><sp/><sp/>1024U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="38" refid="group__energy__parameters__convert_1ga079aafefd5f8ab57ee5120099a34bd25" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_INT_11<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>2048U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="40" refid="group__energy__parameters__convert_1gacf770881d9034431ebe741642342a1f9" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_INT_21<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>4096U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="42" refid="group__energy__parameters__convert_1gaa307671e2631cdacad9cbe4c6583b05f" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_INT_22<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>8192U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="44" refid="group__energy__parameters__convert_1ga7092fe0be4de6f02cc0bf08e81af726a" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_BULGE<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>16384U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="46" refid="group__energy__parameters__convert_1gac5c2289fdf8ff1b980976d1613ff943a" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_INT<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>32768U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="48" refid="group__energy__parameters__convert_1gaf2c8755d64eff3852aa45df9ac80a4fe" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_ML<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>65536U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="50" refid="group__energy__parameters__convert_1ga46d5b1535ae86060b6317565b7c6b40b" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_MISC<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>131072U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="52" refid="group__energy__parameters__convert_1gaa1ff48a79642d69579d1766561ec6db6" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_SPECIAL_HP<sp/><sp/><sp/><sp/>262144U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="54" refid="group__energy__parameters__convert_1ga0d4e8a836bb4864ab5129c085dbf592d" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_VANILLA<sp/><sp/><sp/><sp/><sp/><sp/><sp/>524288U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="56" refid="group__energy__parameters__convert_1ga2eb0462f16939ddacdaf751a88d675ce" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_NINIO<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>1048576U</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="58" refid="group__energy__parameters__convert_1gac86976e9c2a55b3a6481ea60044f6098" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_CONVERT_OUTPUT_DUMP<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>2097152U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="59"><highlight class="normal"></highlight></codeline>
<codeline lineno="82" refid="group__energy__parameters__convert_1gafbe538bc4eb2cf2a33326e1010005f8a" refkind="member"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"><sp/><ref refid="group__energy__parameters__convert_1gafbe538bc4eb2cf2a33326e1010005f8a" kindref="member">convert_parameter_file</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>*iname,</highlight></codeline>
<codeline lineno="83"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>*oname,</highlight></codeline>
<codeline lineno="84"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/>options);</highlight></codeline>
<codeline lineno="85"><highlight class="normal"></highlight></codeline>
<codeline lineno="86"><highlight class="normal"></highlight></codeline>
<codeline lineno="90"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/params/convert.h"/>
  </compounddef>
</doxygen>
