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    <sectiondef kind="func">
      <member refid="group__energy__parameters__salt_1gae83764d58e98e05ea49530775bcba104" kind="function"><name>vrna_salt_loop</name></member>
      <member refid="group__energy__parameters__salt_1ga79eb7c0dcb7e08dd37437c19be4a7751" kind="function"><name>vrna_salt_loop_int</name></member>
      <member refid="group__energy__parameters__salt_1gab1b3e5d8995b1688765e4244038f157f" kind="function"><name>vrna_salt_stack</name></member>
      <member refid="group__energy__parameters__salt_1ga1099cd74de693d0aecc7b471342e1a31" kind="function"><name>vrna_salt_ml</name></member>
      <member refid="group__energy__parameters__salt_1ga157f362ca309f306c66bc668edb3aceb" kind="function"><name>vrna_salt_duplex_init</name></member>
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    <briefdescription>
<para>Functions to compute salt correction. </para>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_LOOPS_SALT_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_LOOPS_SALT_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight></codeline>
<codeline lineno="14"><highlight class="normal"></highlight></codeline>
<codeline lineno="15"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;math.h&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="16"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&quot;<ref refid="utils_2basic_8h" kindref="compound">ViennaRNA/utils/basic.h</ref>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="17"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&quot;<ref refid="model_8h" kindref="compound">ViennaRNA/model.h</ref>&quot;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="18"><highlight class="normal"></highlight></codeline>
<codeline lineno="19"><highlight class="normal"></highlight></codeline>
<codeline lineno="30"><highlight class="normal"></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="31" refid="group__energy__parameters__salt_1gae83764d58e98e05ea49530775bcba104" refkind="member"><highlight class="normal"><ref refid="group__energy__parameters__salt_1gae83764d58e98e05ea49530775bcba104" kindref="member">vrna_salt_loop</ref>(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>L,<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><ref refid="group__model__details_1ga59bc4fe917f2ad11376d083260e289da" kindref="member">salt</ref>,<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/>T,<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/>backbonelen);</highlight></codeline>
<codeline lineno="32"><highlight class="normal"></highlight></codeline>
<codeline lineno="33"><highlight class="normal"></highlight></codeline>
<codeline lineno="48"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="49" refid="group__energy__parameters__salt_1ga79eb7c0dcb7e08dd37437c19be4a7751" refkind="member"><highlight class="normal"><ref refid="group__energy__parameters__salt_1ga79eb7c0dcb7e08dd37437c19be4a7751" kindref="member">vrna_salt_loop_int</ref>(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>L,<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><ref refid="group__model__details_1ga59bc4fe917f2ad11376d083260e289da" kindref="member">salt</ref>,<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/>T,<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/>backbonelen);</highlight></codeline>
<codeline lineno="50"><highlight class="normal"></highlight></codeline>
<codeline lineno="51"><highlight class="normal"></highlight></codeline>
<codeline lineno="61"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="62" refid="group__energy__parameters__salt_1gab1b3e5d8995b1688765e4244038f157f" refkind="member"><highlight class="normal"><ref refid="group__energy__parameters__salt_1gab1b3e5d8995b1688765e4244038f157f" kindref="member">vrna_salt_stack</ref>(</highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><ref refid="group__model__details_1ga59bc4fe917f2ad11376d083260e289da" kindref="member">salt</ref>,<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/>T,<sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/>hrise);</highlight></codeline>
<codeline lineno="63"><highlight class="normal"></highlight></codeline>
<codeline lineno="64"><highlight class="normal"></highlight></codeline>
<codeline lineno="81"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="82" refid="group__energy__parameters__salt_1ga1099cd74de693d0aecc7b471342e1a31" refkind="member"><highlight class="normal"><ref refid="group__energy__parameters__salt_1ga1099cd74de693d0aecc7b471342e1a31" kindref="member">vrna_salt_ml</ref>(</highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/>saltLoop[],<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>lower,<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>upper,<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*m,<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*b);</highlight></codeline>
<codeline lineno="83"><highlight class="normal"></highlight></codeline>
<codeline lineno="84"><highlight class="normal"></highlight></codeline>
<codeline lineno="91"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="92" refid="group__energy__parameters__salt_1ga157f362ca309f306c66bc668edb3aceb" refkind="member"><highlight class="normal"><ref refid="group__energy__parameters__salt_1ga157f362ca309f306c66bc668edb3aceb" kindref="member">vrna_salt_duplex_init</ref>(<ref refid="group__model__details_1ga1f8a10e12a0a1915f2a4eff0b28ea17c" kindref="member">vrna_md_t</ref><sp/>*md);</highlight></codeline>
<codeline lineno="93"><highlight class="normal"></highlight></codeline>
<codeline lineno="97"><highlight class="normal"></highlight></codeline>
<codeline lineno="98"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
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