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  <compounddef id="structTwoDpfold__vars" kind="struct" language="C++" prot="public">
    <compoundname>TwoDpfold_vars</compoundname>
    <includes refid="2Dpfold_8h" local="no">ViennaRNA/2Dpfold.h</includes>
    <sectiondef kind="public-attrib">
      <memberdef kind="variable" id="structTwoDpfold__vars_1a0821fddd5fe7892cd86933b506d2822e" prot="public" static="no" mutable="no">
        <type>unsigned int</type>
        <definition>unsigned int TwoDpfold_vars::alloc</definition>
        <argsstring></argsstring>
        <name>alloc</name>
        <qualifiedname>TwoDpfold_vars::alloc</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="152" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="152" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a67f37b8901b8d0a049c216d4c6241b07" prot="public" static="no" mutable="no">
        <type>char *</type>
        <definition>char* TwoDpfold_vars::ptype</definition>
        <argsstring></argsstring>
        <name>ptype</name>
        <qualifiedname>TwoDpfold_vars::ptype</qualifiedname>
        <briefdescription>
<para>Precomputed array of pair types. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="153" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="153" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a32c15a1e31856588259556c9020f32c6" prot="public" static="no" mutable="no">
        <type>char *</type>
        <definition>char* TwoDpfold_vars::sequence</definition>
        <argsstring></argsstring>
        <name>sequence</name>
        <qualifiedname>TwoDpfold_vars::sequence</qualifiedname>
        <briefdescription>
<para>The input sequence. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="154" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="154" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1aa71adc5ac2f9b4c538024500222f9f3d" prot="public" static="no" mutable="no">
        <type>short *</type>
        <definition>short* TwoDpfold_vars::S</definition>
        <argsstring></argsstring>
        <name>S</name>
        <qualifiedname>TwoDpfold_vars::S</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="155" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="155" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1a240311ae1e8e121441651d6101e187ac" prot="public" static="no" mutable="no">
        <type>short *</type>
        <definition>short * TwoDpfold_vars::S1</definition>
        <argsstring></argsstring>
        <name>S1</name>
        <qualifiedname>TwoDpfold_vars::S1</qualifiedname>
        <briefdescription>
<para>The input sequences in numeric form. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="155" column="27" bodyfile="ViennaRNA/2Dpfold.h" bodystart="155" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a7292b6cbc1ee5bacf55e842f316c4bef" prot="public" static="no" mutable="no">
        <type>unsigned int</type>
        <definition>unsigned int TwoDpfold_vars::maxD1</definition>
        <argsstring></argsstring>
        <name>maxD1</name>
        <qualifiedname>TwoDpfold_vars::maxD1</qualifiedname>
        <briefdescription>
<para>Maximum allowed base pair distance to first reference. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="156" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="156" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1a8900622d91454d2d037242e290e42834" prot="public" static="no" mutable="no">
        <type>unsigned int</type>
        <definition>unsigned int TwoDpfold_vars::maxD2</definition>
        <argsstring></argsstring>
        <name>maxD2</name>
        <qualifiedname>TwoDpfold_vars::maxD2</qualifiedname>
        <briefdescription>
<para>Maximum allowed base pair distance to second reference. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="157" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="157" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1a77da404c38e4609a8635a33f00d54eca" prot="public" static="no" mutable="no">
        <type>double</type>
        <definition>double TwoDpfold_vars::temperature</definition>
        <argsstring></argsstring>
        <name>temperature</name>
        <qualifiedname>TwoDpfold_vars::temperature</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="159" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="159" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1aa63eb4185fd5e35b3ce3a1c46c44124b" prot="public" static="no" mutable="no">
        <type>double</type>
        <definition>double TwoDpfold_vars::init_temp</definition>
        <argsstring></argsstring>
        <name>init_temp</name>
        <qualifiedname>TwoDpfold_vars::init_temp</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a87c8a08af2acb04d134989ee5126a3ad" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> *</type>
        <definition>FLT_OR_DBL* TwoDpfold_vars::scale</definition>
        <argsstring></argsstring>
        <name>scale</name>
        <qualifiedname>TwoDpfold_vars::scale</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a0f67701d0a2bc9253dce725261187a03" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref></type>
        <definition>FLT_OR_DBL TwoDpfold_vars::pf_scale</definition>
        <argsstring></argsstring>
        <name>pf_scale</name>
        <qualifiedname>TwoDpfold_vars::pf_scale</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="162" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="162" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a6158d3c08cfeecb84783ee2c30791808" prot="public" static="no" mutable="no">
        <type><ref refid="group__energy__parameters_1ga01d8b92fe734df8d79a6169482c7d8d8" kindref="member">vrna_exp_param_t</ref> *</type>
        <definition>vrna_exp_param_t* TwoDpfold_vars::pf_params</definition>
        <argsstring></argsstring>
        <name>pf_params</name>
        <qualifiedname>TwoDpfold_vars::pf_params</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="163" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="163" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1ac2d3e6abf0cb0e1df363904fc938076e" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::my_iindx</definition>
        <argsstring></argsstring>
        <name>my_iindx</name>
        <qualifiedname>TwoDpfold_vars::my_iindx</qualifiedname>
        <briefdescription>
<para>Index for moving in quadratic distancy dimensions. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="165" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="165" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1a0699e194a797532c91b284ab10272384" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::jindx</definition>
        <argsstring></argsstring>
        <name>jindx</name>
        <qualifiedname>TwoDpfold_vars::jindx</qualifiedname>
        <briefdescription>
<para>Index for moving in the triangular matrix qm1. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="166" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="166" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1af4c968cf0ebecfc45ce5b0c702343ff0" prot="public" static="no" mutable="no">
        <type>short *</type>
        <definition>short* TwoDpfold_vars::reference_pt1</definition>
        <argsstring></argsstring>
        <name>reference_pt1</name>
        <qualifiedname>TwoDpfold_vars::reference_pt1</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="168" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="168" bodyend="-1"/>
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        <type>short *</type>
        <definition>short* TwoDpfold_vars::reference_pt2</definition>
        <argsstring></argsstring>
        <name>reference_pt2</name>
        <qualifiedname>TwoDpfold_vars::reference_pt2</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="169" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="169" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1aea15706d27b6b0fc19f5773919f43a8a" prot="public" static="no" mutable="no">
        <type>unsigned int *</type>
        <definition>unsigned int* TwoDpfold_vars::referenceBPs1</definition>
        <argsstring></argsstring>
        <name>referenceBPs1</name>
        <qualifiedname>TwoDpfold_vars::referenceBPs1</qualifiedname>
        <briefdescription>
<para>Matrix containing number of basepairs of reference structure1 in interval [i,j]. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="171" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="171" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a1221396d712bf76b7f35297f2ab35a9f" prot="public" static="no" mutable="no">
        <type>unsigned int *</type>
        <definition>unsigned int* TwoDpfold_vars::referenceBPs2</definition>
        <argsstring></argsstring>
        <name>referenceBPs2</name>
        <qualifiedname>TwoDpfold_vars::referenceBPs2</qualifiedname>
        <briefdescription>
<para>Matrix containing number of basepairs of reference structure2 in interval [i,j]. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="172" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="172" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1accef8eaa05fa57ca33aa22cbc7b7aaff" prot="public" static="no" mutable="no">
        <type>unsigned int *</type>
        <definition>unsigned int* TwoDpfold_vars::bpdist</definition>
        <argsstring></argsstring>
        <name>bpdist</name>
        <qualifiedname>TwoDpfold_vars::bpdist</qualifiedname>
        <briefdescription>
<para>Matrix containing base pair distance of reference structure 1 and 2 on interval [i,j]. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="173" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="173" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1a7c9e9af6224d4696118e05835441863d" prot="public" static="no" mutable="no">
        <type>unsigned int *</type>
        <definition>unsigned int* TwoDpfold_vars::mm1</definition>
        <argsstring></argsstring>
        <name>mm1</name>
        <qualifiedname>TwoDpfold_vars::mm1</qualifiedname>
        <briefdescription>
<para>Maximum matching matrix, reference struct 1 disallowed. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="175" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="175" bodyend="-1"/>
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        <type>unsigned int *</type>
        <definition>unsigned int* TwoDpfold_vars::mm2</definition>
        <argsstring></argsstring>
        <name>mm2</name>
        <qualifiedname>TwoDpfold_vars::mm2</qualifiedname>
        <briefdescription>
<para>Maximum matching matrix, reference struct 2 disallowed. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="176" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="176" bodyend="-1"/>
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        <type>int</type>
        <definition>int TwoDpfold_vars::circ</definition>
        <argsstring></argsstring>
        <name>circ</name>
        <qualifiedname>TwoDpfold_vars::circ</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="178" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="178" bodyend="-1"/>
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        <type>int</type>
        <definition>int TwoDpfold_vars::dangles</definition>
        <argsstring></argsstring>
        <name>dangles</name>
        <qualifiedname>TwoDpfold_vars::dangles</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>unsigned int</type>
        <definition>unsigned int TwoDpfold_vars::seq_length</definition>
        <argsstring></argsstring>
        <name>seq_length</name>
        <qualifiedname>TwoDpfold_vars::seq_length</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> ***</type>
        <definition>FLT_OR_DBL*** TwoDpfold_vars::Q</definition>
        <argsstring></argsstring>
        <name>Q</name>
        <qualifiedname>TwoDpfold_vars::Q</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> ***</type>
        <definition>FLT_OR_DBL*** TwoDpfold_vars::Q_B</definition>
        <argsstring></argsstring>
        <name>Q_B</name>
        <qualifiedname>TwoDpfold_vars::Q_B</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> ***</type>
        <definition>FLT_OR_DBL*** TwoDpfold_vars::Q_M</definition>
        <argsstring></argsstring>
        <name>Q_M</name>
        <qualifiedname>TwoDpfold_vars::Q_M</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> ***</type>
        <definition>FLT_OR_DBL*** TwoDpfold_vars::Q_M1</definition>
        <argsstring></argsstring>
        <name>Q_M1</name>
        <qualifiedname>TwoDpfold_vars::Q_M1</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> ***</type>
        <definition>FLT_OR_DBL*** TwoDpfold_vars::Q_M2</definition>
        <argsstring></argsstring>
        <name>Q_M2</name>
        <qualifiedname>TwoDpfold_vars::Q_M2</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> **</type>
        <definition>FLT_OR_DBL** TwoDpfold_vars::Q_c</definition>
        <argsstring></argsstring>
        <name>Q_c</name>
        <qualifiedname>TwoDpfold_vars::Q_c</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> **</type>
        <definition>FLT_OR_DBL** TwoDpfold_vars::Q_cH</definition>
        <argsstring></argsstring>
        <name>Q_cH</name>
        <qualifiedname>TwoDpfold_vars::Q_cH</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> **</type>
        <definition>FLT_OR_DBL** TwoDpfold_vars::Q_cI</definition>
        <argsstring></argsstring>
        <name>Q_cI</name>
        <qualifiedname>TwoDpfold_vars::Q_cI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
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        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> **</type>
        <definition>FLT_OR_DBL** TwoDpfold_vars::Q_cM</definition>
        <argsstring></argsstring>
        <name>Q_cM</name>
        <qualifiedname>TwoDpfold_vars::Q_cM</qualifiedname>
        <briefdescription>
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        <detaileddescription>
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        <definition>int** TwoDpfold_vars::l_min_values</definition>
        <argsstring></argsstring>
        <name>l_min_values</name>
        <qualifiedname>TwoDpfold_vars::l_min_values</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <definition>int** TwoDpfold_vars::l_max_values</definition>
        <argsstring></argsstring>
        <name>l_max_values</name>
        <qualifiedname>TwoDpfold_vars::l_max_values</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
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        <type>int *</type>
        <definition>int* TwoDpfold_vars::k_min_values</definition>
        <argsstring></argsstring>
        <name>k_min_values</name>
        <qualifiedname>TwoDpfold_vars::k_min_values</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
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        <type>int *</type>
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        <argsstring></argsstring>
        <name>k_max_values</name>
        <qualifiedname>TwoDpfold_vars::k_max_values</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <argsstring></argsstring>
        <name>l_min_values_b</name>
        <qualifiedname>TwoDpfold_vars::l_min_values_b</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
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        <type>int **</type>
        <definition>int** TwoDpfold_vars::l_max_values_b</definition>
        <argsstring></argsstring>
        <name>l_max_values_b</name>
        <qualifiedname>TwoDpfold_vars::l_max_values_b</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
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        <type>int *</type>
        <definition>int* TwoDpfold_vars::k_min_values_b</definition>
        <argsstring></argsstring>
        <name>k_min_values_b</name>
        <qualifiedname>TwoDpfold_vars::k_min_values_b</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int *</type>
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        <argsstring></argsstring>
        <name>k_max_values_b</name>
        <qualifiedname>TwoDpfold_vars::k_max_values_b</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <type>int **</type>
        <definition>int** TwoDpfold_vars::l_min_values_m</definition>
        <argsstring></argsstring>
        <name>l_min_values_m</name>
        <qualifiedname>TwoDpfold_vars::l_min_values_m</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int **</type>
        <definition>int** TwoDpfold_vars::l_max_values_m</definition>
        <argsstring></argsstring>
        <name>l_max_values_m</name>
        <qualifiedname>TwoDpfold_vars::l_max_values_m</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int *</type>
        <definition>int* TwoDpfold_vars::k_min_values_m</definition>
        <argsstring></argsstring>
        <name>k_min_values_m</name>
        <qualifiedname>TwoDpfold_vars::k_min_values_m</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int *</type>
        <definition>int* TwoDpfold_vars::k_max_values_m</definition>
        <argsstring></argsstring>
        <name>k_max_values_m</name>
        <qualifiedname>TwoDpfold_vars::k_max_values_m</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a5bbf929dd3419fc8e4437629b79117d2" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** TwoDpfold_vars::l_min_values_m1</definition>
        <argsstring></argsstring>
        <name>l_min_values_m1</name>
        <qualifiedname>TwoDpfold_vars::l_min_values_m1</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int **</type>
        <definition>int** TwoDpfold_vars::l_max_values_m1</definition>
        <argsstring></argsstring>
        <name>l_max_values_m1</name>
        <qualifiedname>TwoDpfold_vars::l_max_values_m1</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a5b2cc962c440d4d382f91d3bb83fc626" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::k_min_values_m1</definition>
        <argsstring></argsstring>
        <name>k_min_values_m1</name>
        <qualifiedname>TwoDpfold_vars::k_min_values_m1</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a479d9e1f8918141d4edb403e7ae17ffb" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::k_max_values_m1</definition>
        <argsstring></argsstring>
        <name>k_max_values_m1</name>
        <qualifiedname>TwoDpfold_vars::k_max_values_m1</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a23382c4abb1025dc70c80f123b7acb99" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** TwoDpfold_vars::l_min_values_m2</definition>
        <argsstring></argsstring>
        <name>l_min_values_m2</name>
        <qualifiedname>TwoDpfold_vars::l_min_values_m2</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1aee731ff9f9241e048fb4759a08122120" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** TwoDpfold_vars::l_max_values_m2</definition>
        <argsstring></argsstring>
        <name>l_max_values_m2</name>
        <qualifiedname>TwoDpfold_vars::l_max_values_m2</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1aa081e5d2fa07f88aff3d385e7a46501f" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::k_min_values_m2</definition>
        <argsstring></argsstring>
        <name>k_min_values_m2</name>
        <qualifiedname>TwoDpfold_vars::k_min_values_m2</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <type>int *</type>
        <definition>int* TwoDpfold_vars::k_max_values_m2</definition>
        <argsstring></argsstring>
        <name>k_max_values_m2</name>
        <qualifiedname>TwoDpfold_vars::k_max_values_m2</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
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        <inbodydescription>
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        <type>int *</type>
        <definition>int* TwoDpfold_vars::l_min_values_qc</definition>
        <argsstring></argsstring>
        <name>l_min_values_qc</name>
        <qualifiedname>TwoDpfold_vars::l_min_values_qc</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1ac313cb35daf31f90f3bbdd669f2efc84" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::l_max_values_qc</definition>
        <argsstring></argsstring>
        <name>l_max_values_qc</name>
        <qualifiedname>TwoDpfold_vars::l_max_values_qc</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <type>int</type>
        <definition>int TwoDpfold_vars::k_min_values_qc</definition>
        <argsstring></argsstring>
        <name>k_min_values_qc</name>
        <qualifiedname>TwoDpfold_vars::k_min_values_qc</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a49f2de79886106d8c883e3796e99cdaa" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int TwoDpfold_vars::k_max_values_qc</definition>
        <argsstring></argsstring>
        <name>k_max_values_qc</name>
        <qualifiedname>TwoDpfold_vars::k_max_values_qc</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a340b77358b5526f4c1a103d16c063fd7" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::l_min_values_qcH</definition>
        <argsstring></argsstring>
        <name>l_min_values_qcH</name>
        <qualifiedname>TwoDpfold_vars::l_min_values_qcH</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a88fa363302685d07b35617a7827718fd" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::l_max_values_qcH</definition>
        <argsstring></argsstring>
        <name>l_max_values_qcH</name>
        <qualifiedname>TwoDpfold_vars::l_max_values_qcH</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1afe32932a2e2d8fa91f07a7428234cc89" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int TwoDpfold_vars::k_min_values_qcH</definition>
        <argsstring></argsstring>
        <name>k_min_values_qcH</name>
        <qualifiedname>TwoDpfold_vars::k_min_values_qcH</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a3864c94a156f27eca22e6e334d81b84b" prot="public" static="no" mutable="no">
        <type>int</type>
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        <argsstring></argsstring>
        <name>k_max_values_qcH</name>
        <qualifiedname>TwoDpfold_vars::k_max_values_qcH</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
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        <inbodydescription>
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        <type>int *</type>
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        <argsstring></argsstring>
        <name>l_min_values_qcI</name>
        <qualifiedname>TwoDpfold_vars::l_min_values_qcI</qualifiedname>
        <briefdescription>
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        <detaileddescription>
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        <type>int *</type>
        <definition>int* TwoDpfold_vars::l_max_values_qcI</definition>
        <argsstring></argsstring>
        <name>l_max_values_qcI</name>
        <qualifiedname>TwoDpfold_vars::l_max_values_qcI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
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        <inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a9246bd9fc33e1a3111d20b9dabeca8e8" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int TwoDpfold_vars::k_min_values_qcI</definition>
        <argsstring></argsstring>
        <name>k_min_values_qcI</name>
        <qualifiedname>TwoDpfold_vars::k_min_values_qcI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1ab0546202982af7d4362ebd0d903f78ce" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int TwoDpfold_vars::k_max_values_qcI</definition>
        <argsstring></argsstring>
        <name>k_max_values_qcI</name>
        <qualifiedname>TwoDpfold_vars::k_max_values_qcI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="231" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="231" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1ae16b98215c9664d6a78c9fe4afadb17c" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::l_min_values_qcM</definition>
        <argsstring></argsstring>
        <name>l_min_values_qcM</name>
        <qualifiedname>TwoDpfold_vars::l_min_values_qcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="233" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="233" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a33bcaa57cdee87495cc4ad5bc72666e8" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDpfold_vars::l_max_values_qcM</definition>
        <argsstring></argsstring>
        <name>l_max_values_qcM</name>
        <qualifiedname>TwoDpfold_vars::l_max_values_qcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="234" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="234" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1abede310aa070713226ddad5d617619f3" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int TwoDpfold_vars::k_min_values_qcM</definition>
        <argsstring></argsstring>
        <name>k_min_values_qcM</name>
        <qualifiedname>TwoDpfold_vars::k_min_values_qcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="235" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="235" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a4a1993d89e7f84824deb48408df8579d" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int TwoDpfold_vars::k_max_values_qcM</definition>
        <argsstring></argsstring>
        <name>k_max_values_qcM</name>
        <qualifiedname>TwoDpfold_vars::k_max_values_qcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="236" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="236" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a8cdb526d5dd01cb96f8aadc108469cb7" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> *</type>
        <definition>FLT_OR_DBL* TwoDpfold_vars::Q_rem</definition>
        <argsstring></argsstring>
        <name>Q_rem</name>
        <qualifiedname>TwoDpfold_vars::Q_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="239" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="239" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1af0996736f7ab00dc604ca5f55e92e6e2" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> *</type>
        <definition>FLT_OR_DBL* TwoDpfold_vars::Q_B_rem</definition>
        <argsstring></argsstring>
        <name>Q_B_rem</name>
        <qualifiedname>TwoDpfold_vars::Q_B_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="240" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="240" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1aa11ef78b6011ccef34ea4899767ac5d7" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> *</type>
        <definition>FLT_OR_DBL* TwoDpfold_vars::Q_M_rem</definition>
        <argsstring></argsstring>
        <name>Q_M_rem</name>
        <qualifiedname>TwoDpfold_vars::Q_M_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="241" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="241" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1ac7c2ae5988f1c89ca2e751b9afd63160" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> *</type>
        <definition>FLT_OR_DBL* TwoDpfold_vars::Q_M1_rem</definition>
        <argsstring></argsstring>
        <name>Q_M1_rem</name>
        <qualifiedname>TwoDpfold_vars::Q_M1_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="242" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="242" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a3da1a9601f99600f685473b890f19fe8" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref> *</type>
        <definition>FLT_OR_DBL* TwoDpfold_vars::Q_M2_rem</definition>
        <argsstring></argsstring>
        <name>Q_M2_rem</name>
        <qualifiedname>TwoDpfold_vars::Q_M2_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="243" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="243" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDpfold__vars_1a8fbe3e1efedc2830991e98f29b0ac8b3" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref></type>
        <definition>FLT_OR_DBL TwoDpfold_vars::Q_c_rem</definition>
        <argsstring></argsstring>
        <name>Q_c_rem</name>
        <qualifiedname>TwoDpfold_vars::Q_c_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="245" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="245" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1a271bc83bf99cfba04619c8a7d07dba47" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref></type>
        <definition>FLT_OR_DBL TwoDpfold_vars::Q_cH_rem</definition>
        <argsstring></argsstring>
        <name>Q_cH_rem</name>
        <qualifiedname>TwoDpfold_vars::Q_cH_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="246" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="246" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1a7b9e38c1962e27f0323911c99d0f77e7" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref></type>
        <definition>FLT_OR_DBL TwoDpfold_vars::Q_cI_rem</definition>
        <argsstring></argsstring>
        <name>Q_cI_rem</name>
        <qualifiedname>TwoDpfold_vars::Q_cI_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="247" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="247" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1a81439a6e4648f9044f7a11b82756cac7" prot="public" static="no" mutable="no">
        <type><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref></type>
        <definition>FLT_OR_DBL TwoDpfold_vars::Q_cM_rem</definition>
        <argsstring></argsstring>
        <name>Q_cM_rem</name>
        <qualifiedname>TwoDpfold_vars::Q_cM_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="248" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="248" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDpfold__vars_1a159ec125caf5c33f5c19dbeeed54c047" prot="public" static="no" mutable="no">
        <type><ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref> *</type>
        <definition>vrna_fold_compound_t* TwoDpfold_vars::compatibility</definition>
        <argsstring></argsstring>
        <name>compatibility</name>
        <qualifiedname>TwoDpfold_vars::compatibility</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dpfold.h" line="250" column="25" bodyfile="ViennaRNA/2Dpfold.h" bodystart="250" bodyend="-1"/>
      </memberdef>
    </sectiondef>
    <briefdescription>
<para>Variables compound for 2Dfold partition function folding. </para>
    </briefdescription>
    <detaileddescription>
<para><xrefsect id="deprecated_1_deprecated000006"><xreftitle>Deprecated</xreftitle><xrefdescription><para>This data structure will be removed from the library soon! Use <ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref> and the corresponding functions vrna_fold_compound_TwoD(), <ref refid="group__kl__neighborhood__pf_1gac3bf71cefa4414f695e51f5da7269ebb" kindref="member">vrna_pf_TwoD()</ref>, and <ref refid="group__fold__compound_1ga576a077b418a9c3650e06f8e5d296fc2" kindref="member">vrna_fold_compound_free()</ref> instead! </para>
</xrefdescription></xrefsect></para>
    </detaileddescription>
    <collaborationgraph>
      <node id="1">
        <label>TwoDpfold_vars</label>
        <link refid="structTwoDpfold__vars"/>
        <childnode refid="2" relation="usage">
          <edgelabel>pf_params</edgelabel>
        </childnode>
        <childnode refid="4" relation="usage">
          <edgelabel>compatibility</edgelabel>
        </childnode>
      </node>
      <node id="6">
        <label>vrna_alignment_s</label>
        <link refid="structvrna__alignment__s"/>
        <childnode refid="5" relation="usage">
          <edgelabel>sequences</edgelabel>
        </childnode>
      </node>
      <node id="15">
        <label>vrna_basepair_t</label>
        <link refid="structvrna__basepair__t"/>
      </node>
      <node id="2">
        <label>vrna_exp_param_s</label>
        <link refid="structvrna__exp__param__s"/>
        <childnode refid="3" relation="usage">
          <edgelabel>model_details</edgelabel>
        </childnode>
      </node>
      <node id="4">
        <label>vrna_fc_s</label>
        <link refid="structvrna__fc__s"/>
        <childnode refid="5" relation="usage">
          <edgelabel>nucleotides</edgelabel>
        </childnode>
        <childnode refid="6" relation="usage">
          <edgelabel>alignment</edgelabel>
        </childnode>
        <childnode refid="7" relation="usage">
          <edgelabel>hc</edgelabel>
        </childnode>
        <childnode refid="8" relation="usage">
          <edgelabel>matrices</edgelabel>
        </childnode>
        <childnode refid="9" relation="usage">
          <edgelabel>exp_matrices</edgelabel>
        </childnode>
        <childnode refid="10" relation="usage">
          <edgelabel>params</edgelabel>
        </childnode>
        <childnode refid="2" relation="usage">
          <edgelabel>exp_params</edgelabel>
        </childnode>
        <childnode refid="4" relation="usage">
          <edgelabel>stat_cb</edgelabel>
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        <childnode refid="11" relation="usage">
          <edgelabel>domains_struc</edgelabel>
        </childnode>
        <childnode refid="12" relation="usage">
          <edgelabel>domains_up</edgelabel>
        </childnode>
        <childnode refid="13" relation="usage">
          <edgelabel>sc</edgelabel>
          <edgelabel>scs</edgelabel>
        </childnode>
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      <node id="7">
        <label>vrna_hc_s</label>
        <link refid="structvrna__hc__s"/>
        <childnode refid="7" relation="usage">
          <edgelabel>eval_ext</edgelabel>
          <edgelabel>eval_hp</edgelabel>
          <edgelabel>eval_int</edgelabel>
          <edgelabel>eval_mb</edgelabel>
        </childnode>
      </node>
      <node id="3">
        <label>vrna_md_s</label>
        <link refid="structvrna__md__s"/>
      </node>
      <node id="8">
        <label>vrna_mx_mfe_s</label>
        <link refid="structvrna__mx__mfe__s"/>
      </node>
      <node id="9">
        <label>vrna_mx_pf_s</label>
        <link refid="structvrna__mx__pf__s"/>
      </node>
      <node id="10">
        <label>vrna_param_s</label>
        <link refid="structvrna__param__s"/>
        <childnode refid="3" relation="usage">
          <edgelabel>model_details</edgelabel>
        </childnode>
      </node>
      <node id="14">
        <label>vrna_sc_bp_storage_t</label>
        <link refid="structvrna__sc__bp__storage__t"/>
      </node>
      <node id="13">
        <label>vrna_sc_s</label>
        <link refid="structvrna__sc__s"/>
        <childnode refid="14" relation="usage">
          <edgelabel>bp_storage</edgelabel>
        </childnode>
        <childnode refid="15" relation="usage">
          <edgelabel>bt</edgelabel>
        </childnode>
        <childnode refid="4" relation="usage">
          <edgelabel>prepare_data</edgelabel>
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      <node id="5">
        <label>vrna_sequence_s</label>
        <link refid="structvrna__sequence__s"/>
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        <label>vrna_structured_domains_s</label>
        <link refid="structvrna__structured__domains__s"/>
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        <label>vrna_unstructured_domain_s</label>
        <link refid="structvrna__unstructured__domain__s"/>
        <childnode refid="4" relation="usage">
          <edgelabel>energy_cb</edgelabel>
          <edgelabel>exp_energy_cb</edgelabel>
          <edgelabel>exp_prod_cb</edgelabel>
          <edgelabel>probs_add</edgelabel>
          <edgelabel>probs_get</edgelabel>
          <edgelabel>prod_cb</edgelabel>
        </childnode>
      </node>
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    <location file="ViennaRNA/2Dpfold.h" line="151" column="1" bodyfile="ViennaRNA/2Dpfold.h" bodystart="151" bodyend="251"/>
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      <member refid="structTwoDpfold__vars_1accef8eaa05fa57ca33aa22cbc7b7aaff" prot="public" virt="non-virtual"><scope>TwoDpfold_vars</scope><name>bpdist</name></member>
      <member refid="structTwoDpfold__vars_1ad1b0ec8721d3ff1522a41c0bcedc3fd5" prot="public" virt="non-virtual"><scope>TwoDpfold_vars</scope><name>circ</name></member>
      <member refid="structTwoDpfold__vars_1a159ec125caf5c33f5c19dbeeed54c047" prot="public" virt="non-virtual"><scope>TwoDpfold_vars</scope><name>compatibility</name></member>
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      <member refid="structTwoDpfold__vars_1a0699e194a797532c91b284ab10272384" prot="public" virt="non-virtual"><scope>TwoDpfold_vars</scope><name>jindx</name></member>
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      <member refid="structTwoDpfold__vars_1ab0546202982af7d4362ebd0d903f78ce" prot="public" virt="non-virtual"><scope>TwoDpfold_vars</scope><name>k_max_values_qcI</name></member>
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