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  <compounddef id="structTwoDfold__vars" kind="struct" language="C++" prot="public">
    <compoundname>TwoDfold_vars</compoundname>
    <includes refid="2Dfold_8h" local="no">ViennaRNA/2Dfold.h</includes>
    <sectiondef kind="public-attrib">
      <memberdef kind="variable" id="structTwoDfold__vars_1a70da9e83ad87c37013b4bf0b265dd307" prot="public" static="no" mutable="no">
        <type><ref refid="group__energy__parameters_1ga8a69ca7d787e4fd6079914f5343a1f35" kindref="member">vrna_param_t</ref> *</type>
        <definition>vrna_param_t* TwoDfold_vars::P</definition>
        <argsstring></argsstring>
        <name>P</name>
        <qualifiedname>TwoDfold_vars::P</qualifiedname>
        <briefdescription>
<para>Precomputed energy parameters and model details. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="125" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="125" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1ade5c7e9337a458ae20bac75abdc52d64" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int TwoDfold_vars::do_backtrack</definition>
        <argsstring></argsstring>
        <name>do_backtrack</name>
        <qualifiedname>TwoDfold_vars::do_backtrack</qualifiedname>
        <briefdescription>
<para>Flag whether to do backtracing of the structure(s) or not. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="126" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="126" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1aedf60b8b26dae05ad266d3e098d18208" prot="public" static="no" mutable="no">
        <type>char *</type>
        <definition>char* TwoDfold_vars::ptype</definition>
        <argsstring></argsstring>
        <name>ptype</name>
        <qualifiedname>TwoDfold_vars::ptype</qualifiedname>
        <briefdescription>
<para>Precomputed array of pair types. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="127" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="127" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1a3596f3d4d320318c4b8428e2abc7ab56" prot="public" static="no" mutable="no">
        <type>char *</type>
        <definition>char* TwoDfold_vars::sequence</definition>
        <argsstring></argsstring>
        <name>sequence</name>
        <qualifiedname>TwoDfold_vars::sequence</qualifiedname>
        <briefdescription>
<para>The input sequence. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="128" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="128" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1adcf49c88c890de55d2215532bf22006c" prot="public" static="no" mutable="no">
        <type>short *</type>
        <definition>short* TwoDfold_vars::S</definition>
        <argsstring></argsstring>
        <name>S</name>
        <qualifiedname>TwoDfold_vars::S</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="129" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="129" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1ab9ee459ffbfb5d2c138a033516056cdc" prot="public" static="no" mutable="no">
        <type>short *</type>
        <definition>short * TwoDfold_vars::S1</definition>
        <argsstring></argsstring>
        <name>S1</name>
        <qualifiedname>TwoDfold_vars::S1</qualifiedname>
        <briefdescription>
<para>The input sequences in numeric form. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="129" column="27" bodyfile="ViennaRNA/2Dfold.h" bodystart="129" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1a621ed2ab02116f3f8f5e7120dec429eb" prot="public" static="no" mutable="no">
        <type>unsigned int</type>
        <definition>unsigned int TwoDfold_vars::maxD1</definition>
        <argsstring></argsstring>
        <name>maxD1</name>
        <qualifiedname>TwoDfold_vars::maxD1</qualifiedname>
        <briefdescription>
<para>Maximum allowed base pair distance to first reference. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="130" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="130" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1a03f198a4abdb3b784486d2ba5c533aa4" prot="public" static="no" mutable="no">
        <type>unsigned int</type>
        <definition>unsigned int TwoDfold_vars::maxD2</definition>
        <argsstring></argsstring>
        <name>maxD2</name>
        <qualifiedname>TwoDfold_vars::maxD2</qualifiedname>
        <briefdescription>
<para>Maximum allowed base pair distance to second reference. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="131" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="131" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1aa11f5bcd8c4fe70a91c155c877c855d5" prot="public" static="no" mutable="no">
        <type>unsigned int *</type>
        <definition>unsigned int* TwoDfold_vars::mm1</definition>
        <argsstring></argsstring>
        <name>mm1</name>
        <qualifiedname>TwoDfold_vars::mm1</qualifiedname>
        <briefdescription>
<para>Maximum matching matrix, reference struct 1 disallowed. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="134" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="134" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1a2eaa93316b6beb17531f0c078806036c" prot="public" static="no" mutable="no">
        <type>unsigned int *</type>
        <definition>unsigned int* TwoDfold_vars::mm2</definition>
        <argsstring></argsstring>
        <name>mm2</name>
        <qualifiedname>TwoDfold_vars::mm2</qualifiedname>
        <briefdescription>
<para>Maximum matching matrix, reference struct 2 disallowed. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="135" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="135" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1a1a20cb06b58b75d1a3dbdbc8bc60d0a7" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDfold_vars::my_iindx</definition>
        <argsstring></argsstring>
        <name>my_iindx</name>
        <qualifiedname>TwoDfold_vars::my_iindx</qualifiedname>
        <briefdescription>
<para>Index for moving in quadratic distancy dimensions. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="137" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="137" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1aaaecad48586cf29db9cfe78ba0d03e64" prot="public" static="no" mutable="no">
        <type>double</type>
        <definition>double TwoDfold_vars::temperature</definition>
        <argsstring></argsstring>
        <name>temperature</name>
        <qualifiedname>TwoDfold_vars::temperature</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="139" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="139" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1a536525b98c1b633d4c5f2da4f8d78c18" prot="public" static="no" mutable="no">
        <type>unsigned int *</type>
        <definition>unsigned int* TwoDfold_vars::referenceBPs1</definition>
        <argsstring></argsstring>
        <name>referenceBPs1</name>
        <qualifiedname>TwoDfold_vars::referenceBPs1</qualifiedname>
        <briefdescription>
<para>Matrix containing number of basepairs of reference structure1 in interval [i,j]. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="141" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="141" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1aa7abf73c3114cb5f0dc90e702fa9dd0f" prot="public" static="no" mutable="no">
        <type>unsigned int *</type>
        <definition>unsigned int* TwoDfold_vars::referenceBPs2</definition>
        <argsstring></argsstring>
        <name>referenceBPs2</name>
        <qualifiedname>TwoDfold_vars::referenceBPs2</qualifiedname>
        <briefdescription>
<para>Matrix containing number of basepairs of reference structure2 in interval [i,j]. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="142" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="142" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1af1106e1a592e2dccc92b3452340549e0" prot="public" static="no" mutable="no">
        <type>unsigned int *</type>
        <definition>unsigned int* TwoDfold_vars::bpdist</definition>
        <argsstring></argsstring>
        <name>bpdist</name>
        <qualifiedname>TwoDfold_vars::bpdist</qualifiedname>
        <briefdescription>
<para>Matrix containing base pair distance of reference structure 1 and 2 on interval [i,j]. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="143" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="143" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1ac3d9b7ee368f1cd0be1bd06dbfb8afe7" prot="public" static="no" mutable="no">
        <type>short *</type>
        <definition>short* TwoDfold_vars::reference_pt1</definition>
        <argsstring></argsstring>
        <name>reference_pt1</name>
        <qualifiedname>TwoDfold_vars::reference_pt1</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="145" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="145" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDfold__vars_1a1cfef43ced426d71c2c4ffe32e82343b" prot="public" static="no" mutable="no">
        <type>short *</type>
        <definition>short* TwoDfold_vars::reference_pt2</definition>
        <argsstring></argsstring>
        <name>reference_pt2</name>
        <qualifiedname>TwoDfold_vars::reference_pt2</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="146" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="146" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1ae3a4308de89bdaa394375718c894c977" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int TwoDfold_vars::circ</definition>
        <argsstring></argsstring>
        <name>circ</name>
        <qualifiedname>TwoDfold_vars::circ</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="147" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="147" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDfold__vars_1a2344e233bfc046e7261d8c5bea534153" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int TwoDfold_vars::dangles</definition>
        <argsstring></argsstring>
        <name>dangles</name>
        <qualifiedname>TwoDfold_vars::dangles</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="148" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="148" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1a4016860ccba7e21fdccd500446731696" prot="public" static="no" mutable="no">
        <type>unsigned int</type>
        <definition>unsigned int TwoDfold_vars::seq_length</definition>
        <argsstring></argsstring>
        <name>seq_length</name>
        <qualifiedname>TwoDfold_vars::seq_length</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="149" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="149" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structTwoDfold__vars_1a0962f20b286965412ded96cf24db8024" prot="public" static="no" mutable="no">
        <type>int ***</type>
        <definition>int*** TwoDfold_vars::E_F5</definition>
        <argsstring></argsstring>
        <name>E_F5</name>
        <qualifiedname>TwoDfold_vars::E_F5</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="151" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="151" bodyend="-1"/>
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        <type>int ***</type>
        <definition>int*** TwoDfold_vars::E_F3</definition>
        <argsstring></argsstring>
        <name>E_F3</name>
        <qualifiedname>TwoDfold_vars::E_F3</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="152" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="152" bodyend="-1"/>
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        <type>int ***</type>
        <definition>int*** TwoDfold_vars::E_C</definition>
        <argsstring></argsstring>
        <name>E_C</name>
        <qualifiedname>TwoDfold_vars::E_C</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="153" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="153" bodyend="-1"/>
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        <type>int ***</type>
        <definition>int*** TwoDfold_vars::E_M</definition>
        <argsstring></argsstring>
        <name>E_M</name>
        <qualifiedname>TwoDfold_vars::E_M</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int ***</type>
        <definition>int*** TwoDfold_vars::E_M1</definition>
        <argsstring></argsstring>
        <name>E_M1</name>
        <qualifiedname>TwoDfold_vars::E_M1</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int ***</type>
        <definition>int*** TwoDfold_vars::E_M2</definition>
        <argsstring></argsstring>
        <name>E_M2</name>
        <qualifiedname>TwoDfold_vars::E_M2</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int **</type>
        <definition>int** TwoDfold_vars::E_Fc</definition>
        <argsstring></argsstring>
        <name>E_Fc</name>
        <qualifiedname>TwoDfold_vars::E_Fc</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="158" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="158" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDfold__vars_1a8becf4cbe447676dd299b2232337cd3e" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** TwoDfold_vars::E_FcH</definition>
        <argsstring></argsstring>
        <name>E_FcH</name>
        <qualifiedname>TwoDfold_vars::E_FcH</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="159" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="159" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDfold__vars_1abaf57df415bd53e0189d4430c59eb22c" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** TwoDfold_vars::E_FcI</definition>
        <argsstring></argsstring>
        <name>E_FcI</name>
        <qualifiedname>TwoDfold_vars::E_FcI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="160" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="160" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDfold__vars_1aa64e1390f197b238f49c6ffb37992eb2" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** TwoDfold_vars::E_FcM</definition>
        <argsstring></argsstring>
        <name>E_FcM</name>
        <qualifiedname>TwoDfold_vars::E_FcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="161" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="161" bodyend="-1"/>
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        <type>int **</type>
        <definition>int** TwoDfold_vars::l_min_values</definition>
        <argsstring></argsstring>
        <name>l_min_values</name>
        <qualifiedname>TwoDfold_vars::l_min_values</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="163" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="163" bodyend="-1"/>
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        <type>int **</type>
        <definition>int** TwoDfold_vars::l_max_values</definition>
        <argsstring></argsstring>
        <name>l_max_values</name>
        <qualifiedname>TwoDfold_vars::l_max_values</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="164" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="164" bodyend="-1"/>
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      <memberdef kind="variable" id="structTwoDfold__vars_1aed74c3f883cab18bac7d9c66d8cff110" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDfold_vars::k_min_values</definition>
        <argsstring></argsstring>
        <name>k_min_values</name>
        <qualifiedname>TwoDfold_vars::k_min_values</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int *</type>
        <definition>int* TwoDfold_vars::k_max_values</definition>
        <argsstring></argsstring>
        <name>k_max_values</name>
        <qualifiedname>TwoDfold_vars::k_max_values</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
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        <definition>int TwoDfold_vars::k_min_values_fcM</definition>
        <argsstring></argsstring>
        <name>k_min_values_fcM</name>
        <qualifiedname>TwoDfold_vars::k_min_values_fcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <definition>int TwoDfold_vars::k_max_values_fcM</definition>
        <argsstring></argsstring>
        <name>k_max_values_fcM</name>
        <qualifiedname>TwoDfold_vars::k_max_values_fcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDfold__vars_1af414b6e4fc8a32e323998504cbdf3db8" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* TwoDfold_vars::E_F5_rem</definition>
        <argsstring></argsstring>
        <name>E_F5_rem</name>
        <qualifiedname>TwoDfold_vars::E_F5_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <argsstring></argsstring>
        <name>E_F3_rem</name>
        <qualifiedname>TwoDfold_vars::E_F3_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <argsstring></argsstring>
        <name>E_C_rem</name>
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        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <argsstring></argsstring>
        <name>E_M_rem</name>
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        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <argsstring></argsstring>
        <name>E_M1_rem</name>
        <qualifiedname>TwoDfold_vars::E_M1_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <definition>int* TwoDfold_vars::E_M2_rem</definition>
        <argsstring></argsstring>
        <name>E_M2_rem</name>
        <qualifiedname>TwoDfold_vars::E_M2_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <argsstring></argsstring>
        <name>E_Fc_rem</name>
        <qualifiedname>TwoDfold_vars::E_Fc_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <definition>int TwoDfold_vars::E_FcH_rem</definition>
        <argsstring></argsstring>
        <name>E_FcH_rem</name>
        <qualifiedname>TwoDfold_vars::E_FcH_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDfold__vars_1ace876be5e864db1f26967dc8f05a2b89" prot="public" static="no" mutable="no">
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        <definition>int TwoDfold_vars::E_FcI_rem</definition>
        <argsstring></argsstring>
        <name>E_FcI_rem</name>
        <qualifiedname>TwoDfold_vars::E_FcI_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int</type>
        <definition>int TwoDfold_vars::E_FcM_rem</definition>
        <argsstring></argsstring>
        <name>E_FcM_rem</name>
        <qualifiedname>TwoDfold_vars::E_FcM_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <memberdef kind="variable" id="structTwoDfold__vars_1a2f12b3838cfdb8d3c769d36cb517459d" prot="public" static="no" mutable="no">
        <type><ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref> *</type>
        <definition>vrna_fold_compound_t* TwoDfold_vars::compatibility</definition>
        <argsstring></argsstring>
        <name>compatibility</name>
        <qualifiedname>TwoDfold_vars::compatibility</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/2Dfold.h" line="233" column="25" bodyfile="ViennaRNA/2Dfold.h" bodystart="233" bodyend="-1"/>
      </memberdef>
    </sectiondef>
    <briefdescription>
<para>Variables compound for 2Dfold MFE folding. </para>
    </briefdescription>
    <detaileddescription>
<para><xrefsect id="deprecated_1_deprecated000001"><xreftitle>Deprecated</xreftitle><xrefdescription><para>This data structure will be removed from the library soon! Use <ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref> and the corresponding functions vrna_fold_compound_TwoD(), <ref refid="group__kl__neighborhood__mfe_1ga264ac71e75add31dfb1fc72a0b2de709" kindref="member">vrna_mfe_TwoD()</ref>, and <ref refid="group__fold__compound_1ga576a077b418a9c3650e06f8e5d296fc2" kindref="member">vrna_fold_compound_free()</ref> instead! </para>
</xrefdescription></xrefsect></para>
    </detaileddescription>
    <collaborationgraph>
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