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        </childnode>
        <childnode refid="108" relation="include">
        </childnode>
      </node>
      <node id="139">
        <label>ViennaRNA/utils/structures.h</label>
        <link refid="utils_2structures_8h"/>
        <childnode refid="108" relation="include">
        </childnode>
      </node>
      <node id="59">
        <label>ViennaRNA/walk.h</label>
        <link refid="walk_8h"/>
      </node>
    </invincdepgraph>
    <innerclass refid="structvrna__mx__mfe__s" prot="public">vrna_mx_mfe_s</innerclass>
    <innerclass refid="structvrna__mx__pf__s" prot="public">vrna_mx_pf_s</innerclass>
    <sectiondef kind="define">
      <member refid="group__dp__matrices_1gaa797b9c111d5c468629029911d933c40" kind="define"><name>VRNA_MX_FLAG_F5</name></member>
      <member refid="group__dp__matrices_1ga76151f2c1b5a3c0155c341f346a7ceb1" kind="define"><name>VRNA_MX_FLAG_F3</name></member>
      <member refid="group__dp__matrices_1ga5334d5e321bc9a096e126145752aa11f" kind="define"><name>VRNA_MX_FLAG_C</name></member>
      <member refid="group__dp__matrices_1ga1c521f69d87df6bc5fc332280a2c1f5b" kind="define"><name>VRNA_MX_FLAG_M</name></member>
      <member refid="group__dp__matrices_1ga60499f7396d732778305679be66787b1" kind="define"><name>VRNA_MX_FLAG_M2</name></member>
      <member refid="group__dp__matrices_1gae8642a41d6ea120ab6621981695e40cd" kind="define"><name>VRNA_MX_FLAG_M1</name></member>
      <member refid="group__dp__matrices_1gadef396bf2d97171ee41b941637c4777a" kind="define"><name>VRNA_MX_FLAG_MS5</name></member>
      <member refid="group__dp__matrices_1ga3536e4dc8a51b05e14ce1b7722836fae" kind="define"><name>VRNA_MX_FLAG_MS3</name></member>
      <member refid="group__dp__matrices_1ga4d7aba42cdaadc24467c79c53e430702" kind="define"><name>VRNA_MX_FLAG_G</name></member>
      <member refid="group__dp__matrices_1ga99cc7324644e78d92c7090ff462fa2ad" kind="define"><name>VRNA_MX_FLAG_MAX</name></member>
    </sectiondef>
    <sectiondef kind="enum">
      <member refid="group__dp__matrices_1ga6042ea1d58d01931e959791be6d89343" kind="enum"><name>vrna_mx_type_e</name></member>
    </sectiondef>
    <sectiondef kind="typedef">
      <member refid="group__dp__matrices_1gae5aef35d016475e758f619b7bcb534f9" kind="typedef"><name>vrna_mx_mfe_t</name></member>
      <member refid="group__dp__matrices_1ga68729ab3fed26bdd1806fa814f172fc1" kind="typedef"><name>vrna_mx_pf_t</name></member>
    </sectiondef>
    <sectiondef kind="func">
      <member refid="group__dp__matrices_1ga87ffa61e95e5dd3ad34d8c6fa95d4514" kind="function"><name>vrna_mx_add</name></member>
      <member refid="group__dp__matrices_1gadc9f35c77623d8a20401f8993940aef3" kind="function"><name>vrna_mx_mfe_add</name></member>
      <member refid="group__dp__matrices_1ga4adb243d6ca034254e183877308a9aee" kind="function"><name>vrna_mx_pf_add</name></member>
      <member refid="group__dp__matrices_1ga09585cfd149c9a20f0f13ad2ec3825ea" kind="function"><name>vrna_mx_prepare</name></member>
      <member refid="group__dp__matrices_1gaf429b1838e68cb677db6aef7e8f0ffc8" kind="function"><name>vrna_mx_mfe_free</name></member>
      <member refid="group__dp__matrices_1gab9d4eaceb36345b71d349b12787c5e0a" kind="function"><name>vrna_mx_pf_free</name></member>
    </sectiondef>
    <briefdescription>
<para>Functions to deal with standard dynamic programming (DP) matrices. </para>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_DP_MATRICES_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_DP_MATRICES_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight></codeline>
<codeline lineno="18"><highlight class="normal"></highlight></codeline>
<codeline lineno="19"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_F5<sp/><sp/><sp/><sp/><sp/>0U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="20"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_F3<sp/><sp/><sp/><sp/><sp/>7U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="21"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_C<sp/><sp/><sp/><sp/><sp/><sp/>2U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="22"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_M<sp/><sp/><sp/><sp/><sp/><sp/>1U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="23"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_M2<sp/><sp/><sp/><sp/><sp/>8U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="24"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_M1<sp/><sp/><sp/><sp/><sp/>3U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="25"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_MS5<sp/><sp/><sp/><sp/>4U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="26"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_MS3<sp/><sp/><sp/><sp/>5U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="27"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_G<sp/><sp/><sp/><sp/><sp/><sp/>6U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="28"><highlight class="normal"></highlight></codeline>
<codeline lineno="29"><highlight class="normal"></highlight><highlight class="comment">/*<sp/>The<sp/>following<sp/>define<sp/>should<sp/>indicate<sp/>the<sp/>maximum<sp/>matrix<sp/>flag<sp/>we<sp/>use<sp/>internally</highlight></codeline>
<codeline lineno="30"><highlight class="comment"><sp/><sp/><sp/>User-provided<sp/>auxiliary<sp/>grammar<sp/>rules<sp/>will<sp/>then<sp/>be<sp/>assigned<sp/>numbers<sp/>above<sp/>this</highlight></codeline>
<codeline lineno="31"><highlight class="comment"><sp/><sp/><sp/>threshold</highlight></codeline>
<codeline lineno="32"><highlight class="comment">*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="33"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_MX_FLAG_MAX<sp/><sp/><sp/><sp/>31U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="34"><highlight class="normal"></highlight></codeline>
<codeline lineno="36" refid="group__dp__matrices_1gae5aef35d016475e758f619b7bcb534f9" refkind="member"><highlight class="normal"></highlight><highlight class="keyword">typedef</highlight><highlight class="normal"><sp/></highlight><highlight class="keyword">struct<sp/><sp/></highlight><highlight class="normal"><ref refid="structvrna__mx__mfe__s" kindref="compound">vrna_mx_mfe_s</ref><sp/><ref refid="group__dp__matrices_1gae5aef35d016475e758f619b7bcb534f9" kindref="member">vrna_mx_mfe_t</ref>;</highlight></codeline>
<codeline lineno="38" refid="group__dp__matrices_1ga68729ab3fed26bdd1806fa814f172fc1" refkind="member"><highlight class="normal"></highlight><highlight class="keyword">typedef</highlight><highlight class="normal"><sp/></highlight><highlight class="keyword">struct<sp/><sp/></highlight><highlight class="normal"><ref refid="structvrna__mx__pf__s" kindref="compound">vrna_mx_pf_s</ref><sp/><ref refid="group__dp__matrices_1ga68729ab3fed26bdd1806fa814f172fc1" kindref="member">vrna_mx_pf_t</ref>;</highlight></codeline>
<codeline lineno="39"><highlight class="normal"></highlight></codeline>
<codeline lineno="40"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="datastructures_2basic_8h" kindref="compound">ViennaRNA/datastructures/basic.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="41"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;ViennaRNA/datastructures/sparse_mx.h&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="42"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="fold__compound_8h" kindref="compound">ViennaRNA/fold_compound.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="43"><highlight class="normal"></highlight></codeline>
<codeline lineno="50" refid="group__dp__matrices_1ga6042ea1d58d01931e959791be6d89343" refkind="member"><highlight class="normal"></highlight><highlight class="keyword">typedef</highlight><highlight class="normal"><sp/></highlight><highlight class="keyword">enum</highlight><highlight class="normal"><sp/>{</highlight></codeline>
<codeline lineno="51" refid="group__dp__matrices_1gga6042ea1d58d01931e959791be6d89343aafa2568956dab79595521e20c49a5f75" refkind="member"><highlight class="normal"><sp/><sp/><ref refid="group__dp__matrices_1gga6042ea1d58d01931e959791be6d89343aafa2568956dab79595521e20c49a5f75" kindref="member">VRNA_MX_DEFAULT</ref>,<sp/><sp/></highlight></codeline>
<codeline lineno="52" refid="group__dp__matrices_1gga6042ea1d58d01931e959791be6d89343a2ea5d5947f6ec02544934b0ff2785e99" refkind="member"><highlight class="normal"><sp/><sp/><ref refid="group__dp__matrices_1gga6042ea1d58d01931e959791be6d89343a2ea5d5947f6ec02544934b0ff2785e99" kindref="member">VRNA_MX_WINDOW</ref>,<sp/><sp/><sp/></highlight></codeline>
<codeline lineno="56" refid="group__dp__matrices_1gga6042ea1d58d01931e959791be6d89343ae656f8391445ff71bed8a597a0a19417" refkind="member"><highlight class="normal"><sp/><sp/><ref refid="group__dp__matrices_1gga6042ea1d58d01931e959791be6d89343ae656f8391445ff71bed8a597a0a19417" kindref="member">VRNA_MX_2DFOLD</ref><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="59"><highlight class="normal">}<sp/><ref refid="group__dp__matrices_1ga6042ea1d58d01931e959791be6d89343" kindref="member">vrna_mx_type_e</ref>;</highlight></codeline>
<codeline lineno="60"><highlight class="normal"></highlight></codeline>
<codeline lineno="64" refid="structvrna__mx__mfe__s" refkind="compound"><highlight class="normal"></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal"><ref refid="structvrna__mx__mfe__s" kindref="compound">vrna_mx_mfe_s</ref><sp/>{</highlight></codeline>
<codeline lineno="68" refid="structvrna__mx__mfe__s_1a9292754662fd36235ee949c6849932f5" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/><ref refid="group__dp__matrices_1ga6042ea1d58d01931e959791be6d89343" kindref="member">vrna_mx_type_e</ref><sp/><sp/><ref refid="structvrna__mx__mfe__s_1a9292754662fd36235ee949c6849932f5" kindref="member">type</ref>;<sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="69" refid="structvrna__mx__mfe__s_1a1f92a8406fc1fb721dbf9193c34ad826" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="structvrna__mx__mfe__s_1a1f92a8406fc1fb721dbf9193c34ad826" kindref="member">length</ref>;<sp/><sp/><sp/></highlight></codeline>
<codeline lineno="70" refid="structvrna__mx__mfe__s_1a913f00490cd92f47cd726060743baeb8" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="structvrna__mx__mfe__s_1a913f00490cd92f47cd726060743baeb8" kindref="member">strands</ref>;<sp/><sp/></highlight></codeline>
<codeline lineno="74"><highlight class="normal"></highlight></codeline>
<codeline lineno="75"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_C11_FEATURES</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="76"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>C11<sp/>support<sp/>for<sp/>unnamed<sp/>unions/structs<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="77"><highlight class="normal"><sp/><sp/></highlight><highlight class="keyword">union<sp/></highlight><highlight class="normal">{</highlight></codeline>
<codeline lineno="78"><highlight class="normal"><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal">{</highlight></codeline>
<codeline lineno="79"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="85" refid="structvrna__mx__mfe__s_1a60a511fd42905ee4f046c56a76865bf9" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*<ref refid="structvrna__mx__mfe__s_1a60a511fd42905ee4f046c56a76865bf9" kindref="member">c</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="86" refid="structvrna__mx__mfe__s_1abebad693be987c2701d64477ab858039" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*<ref refid="structvrna__mx__mfe__s_1abebad693be987c2701d64477ab858039" kindref="member">f5</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="87" refid="structvrna__mx__mfe__s_1a4ea4595a93733adef047ece8e6f5da52" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*<ref refid="structvrna__mx__mfe__s_1a4ea4595a93733adef047ece8e6f5da52" kindref="member">f3</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="88" refid="structvrna__mx__mfe__s_1ae4f5e14d105d8e8dc3509c8e837f6a5c" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**<ref refid="structvrna__mx__mfe__s_1ae4f5e14d105d8e8dc3509c8e837f6a5c" kindref="member">fms5</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="89" refid="structvrna__mx__mfe__s_1ac2a7cc51cf8c069259faf8d923a8f02d" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**<ref refid="structvrna__mx__mfe__s_1ac2a7cc51cf8c069259faf8d923a8f02d" kindref="member">fms3</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="90" refid="structvrna__mx__mfe__s_1a103995e4ab8e21e7f8bc36a6edcb1331" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*<ref refid="structvrna__mx__mfe__s_1a103995e4ab8e21e7f8bc36a6edcb1331" kindref="member">fML</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="91" refid="structvrna__mx__mfe__s_1ae4e598d601f5ece6b8b4ffffcae2db06" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*<ref refid="structvrna__mx__mfe__s_1ae4e598d601f5ece6b8b4ffffcae2db06" kindref="member">fM1</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="92" refid="structvrna__mx__mfe__s_1ad29106e37d485b3f20b7be468e6c179c" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*<ref refid="structvrna__mx__mfe__s_1ad29106e37d485b3f20b7be468e6c179c" kindref="member">fM2</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="93" refid="structvrna__mx__mfe__s_1a355bf57576fd63bea0bb95482802b667" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*<ref refid="structvrna__mx__mfe__s_1a355bf57576fd63bea0bb95482802b667" kindref="member">fM1_new</ref>;<sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="94" refid="structvrna__mx__mfe__s_1af4724eeb875323dd41fbad8391a0aa2d" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*<ref refid="structvrna__mx__mfe__s_1af4724eeb875323dd41fbad8391a0aa2d" kindref="member">fM2_real</ref>;<sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="95"><highlight class="normal"><sp/><sp/>vrna_smx_csr(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal">)<sp/>*c_gq;<sp/></highlight></codeline>
<codeline lineno="96" refid="structvrna__mx__mfe__s_1ac6a22d71c6a0eccedf978372b19b458a" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><ref refid="structvrna__mx__mfe__s_1ac6a22d71c6a0eccedf978372b19b458a" kindref="member">Fc</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="97" refid="structvrna__mx__mfe__s_1a1ba03c53ee2a32eaf8b46c0eb259e0c4" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><ref refid="structvrna__mx__mfe__s_1a1ba03c53ee2a32eaf8b46c0eb259e0c4" kindref="member">FcH</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="98" refid="structvrna__mx__mfe__s_1a96ac173770c9745a30823fa17fe0b7f4" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><ref refid="structvrna__mx__mfe__s_1a96ac173770c9745a30823fa17fe0b7f4" kindref="member">FcI</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="99" refid="structvrna__mx__mfe__s_1a9a4bf70926f79372388eccc7e73759e9" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><ref refid="structvrna__mx__mfe__s_1a9a4bf70926f79372388eccc7e73759e9" kindref="member">FcM</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="103"><highlight class="normal"></highlight></codeline>
<codeline lineno="104"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_C11_FEATURES</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="105"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>C11<sp/>support<sp/>for<sp/>unnamed<sp/>unions/structs<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="106"><highlight class="normal">};</highlight></codeline>
<codeline lineno="107"><highlight class="normal"></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal">{</highlight></codeline>
<codeline lineno="108"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="preprocessor"></highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="114" refid="structvrna__mx__mfe__s_1a116c677ece0832e6ab9cc2fd1ebfe452" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**<ref refid="structvrna__mx__mfe__s_1a116c677ece0832e6ab9cc2fd1ebfe452" kindref="member">c_local</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="115" refid="structvrna__mx__mfe__s_1a6eae0a2b696b0c63bbaa78a70b950600" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*<ref refid="structvrna__mx__mfe__s_1a6eae0a2b696b0c63bbaa78a70b950600" kindref="member">f3_local</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="116" refid="structvrna__mx__mfe__s_1ad37d705240a8e6b1e9a4e4ea19e74003" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**<ref refid="structvrna__mx__mfe__s_1ad37d705240a8e6b1e9a4e4ea19e74003" kindref="member">fML_local</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="117" refid="structvrna__mx__mfe__s_1afd3ea65bc8f06559f7f1ea79072fa385" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**<ref refid="structvrna__mx__mfe__s_1afd3ea65bc8f06559f7f1ea79072fa385" kindref="member">ggg_local</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="118"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>ggg_local_shift;</highlight></codeline>
<codeline lineno="122"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_C11_FEATURES</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="123"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>C11<sp/>support<sp/>for<sp/>unnamed<sp/>unions/structs<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="124"><highlight class="normal">};</highlight></codeline>
<codeline lineno="125"><highlight class="normal"></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal">{</highlight></codeline>
<codeline lineno="126"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="127"><highlight class="normal"></highlight></codeline>
<codeline lineno="133"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>***E_F5;</highlight></codeline>
<codeline lineno="134"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_min_F5;</highlight></codeline>
<codeline lineno="135"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_max_F5;</highlight></codeline>
<codeline lineno="136"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_min_F5;</highlight></codeline>
<codeline lineno="137"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_max_F5;</highlight></codeline>
<codeline lineno="138"><highlight class="normal"></highlight></codeline>
<codeline lineno="139"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>***E_F3;</highlight></codeline>
<codeline lineno="140"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_min_F3;</highlight></codeline>
<codeline lineno="141"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_max_F3;</highlight></codeline>
<codeline lineno="142"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_min_F3;</highlight></codeline>
<codeline lineno="143"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_max_F3;</highlight></codeline>
<codeline lineno="144"><highlight class="normal"></highlight></codeline>
<codeline lineno="145"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>***E_C;</highlight></codeline>
<codeline lineno="146"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_min_C;</highlight></codeline>
<codeline lineno="147"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_max_C;</highlight></codeline>
<codeline lineno="148"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_min_C;</highlight></codeline>
<codeline lineno="149"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_max_C;</highlight></codeline>
<codeline lineno="150"><highlight class="normal"></highlight></codeline>
<codeline lineno="151"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>***E_M;</highlight></codeline>
<codeline lineno="152"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_min_M;</highlight></codeline>
<codeline lineno="153"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_max_M;</highlight></codeline>
<codeline lineno="154"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_min_M;</highlight></codeline>
<codeline lineno="155"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_max_M;</highlight></codeline>
<codeline lineno="156"><highlight class="normal"></highlight></codeline>
<codeline lineno="157"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>***E_M1;</highlight></codeline>
<codeline lineno="158"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_min_M1;</highlight></codeline>
<codeline lineno="159"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_max_M1;</highlight></codeline>
<codeline lineno="160"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_min_M1;</highlight></codeline>
<codeline lineno="161"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_max_M1;</highlight></codeline>
<codeline lineno="162"><highlight class="normal"></highlight></codeline>
<codeline lineno="163"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>***E_M2;</highlight></codeline>
<codeline lineno="164"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_min_M2;</highlight></codeline>
<codeline lineno="165"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**l_max_M2;</highlight></codeline>
<codeline lineno="166"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_min_M2;</highlight></codeline>
<codeline lineno="167"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*k_max_M2;</highlight></codeline>
<codeline lineno="168"><highlight class="normal"></highlight></codeline>
<codeline lineno="169"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**E_Fc;</highlight></codeline>
<codeline lineno="170"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*l_min_Fc;</highlight></codeline>
<codeline lineno="171"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*l_max_Fc;</highlight></codeline>
<codeline lineno="172"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>k_min_Fc;</highlight></codeline>
<codeline lineno="173"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>k_max_Fc;</highlight></codeline>
<codeline lineno="174"><highlight class="normal"></highlight></codeline>
<codeline lineno="175"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**E_FcH;</highlight></codeline>
<codeline lineno="176"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*l_min_FcH;</highlight></codeline>
<codeline lineno="177"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*l_max_FcH;</highlight></codeline>
<codeline lineno="178"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>k_min_FcH;</highlight></codeline>
<codeline lineno="179"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>k_max_FcH;</highlight></codeline>
<codeline lineno="180"><highlight class="normal"></highlight></codeline>
<codeline lineno="181"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**E_FcI;</highlight></codeline>
<codeline lineno="182"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*l_min_FcI;</highlight></codeline>
<codeline lineno="183"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*l_max_FcI;</highlight></codeline>
<codeline lineno="184"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>k_min_FcI;</highlight></codeline>
<codeline lineno="185"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>k_max_FcI;</highlight></codeline>
<codeline lineno="186"><highlight class="normal"></highlight></codeline>
<codeline lineno="187"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**E_FcM;</highlight></codeline>
<codeline lineno="188"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*l_min_FcM;</highlight></codeline>
<codeline lineno="189"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*l_max_FcM;</highlight></codeline>
<codeline lineno="190"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>k_min_FcM;</highlight></codeline>
<codeline lineno="191"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>k_max_FcM;</highlight></codeline>
<codeline lineno="192"><highlight class="normal"></highlight></codeline>
<codeline lineno="193"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>auxilary<sp/>arrays<sp/>for<sp/>remaining<sp/>set<sp/>of<sp/>coarse<sp/>graining<sp/>(k,l)<sp/>&gt;<sp/>(k_max,<sp/>l_max)<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="194"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*E_F5_rem;</highlight></codeline>
<codeline lineno="195"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*E_F3_rem;</highlight></codeline>
<codeline lineno="196"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*E_C_rem;</highlight></codeline>
<codeline lineno="197"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*E_M_rem;</highlight></codeline>
<codeline lineno="198"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*E_M1_rem;</highlight></codeline>
<codeline lineno="199"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*E_M2_rem;</highlight></codeline>
<codeline lineno="200"><highlight class="normal"></highlight></codeline>
<codeline lineno="201"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>E_Fc_rem;</highlight></codeline>
<codeline lineno="202"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>E_FcH_rem;</highlight></codeline>
<codeline lineno="203"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>E_FcI_rem;</highlight></codeline>
<codeline lineno="204"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>E_FcM_rem;</highlight></codeline>
<codeline lineno="205"><highlight class="normal"></highlight></codeline>
<codeline lineno="206"><highlight class="normal"></highlight><highlight class="preprocessor">#ifdef<sp/>COUNT_STATES</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="207"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">long</highlight><highlight class="normal"><sp/>***N_F5;</highlight></codeline>
<codeline lineno="208"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">long</highlight><highlight class="normal"><sp/>***N_C;</highlight></codeline>
<codeline lineno="209"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">long</highlight><highlight class="normal"><sp/>***N_M;</highlight></codeline>
<codeline lineno="210"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">long</highlight><highlight class="normal"><sp/>***N_M1;</highlight></codeline>
<codeline lineno="211"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="212"><highlight class="normal"></highlight></codeline>
<codeline lineno="216"><highlight class="normal"></highlight></codeline>
<codeline lineno="217"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_C11_FEATURES</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="218"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>C11<sp/>support<sp/>for<sp/>unnamed<sp/>unions/structs<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="219"><highlight class="normal">};</highlight></codeline>
<codeline lineno="220"><highlight class="normal">};</highlight></codeline>
<codeline lineno="221"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="222"><highlight class="normal">};</highlight></codeline>
<codeline lineno="223"><highlight class="normal"></highlight></codeline>
<codeline lineno="227" refid="structvrna__mx__pf__s" refkind="compound"><highlight class="normal"></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal"><ref refid="structvrna__mx__pf__s" kindref="compound">vrna_mx_pf_s</ref><sp/>{</highlight></codeline>
<codeline lineno="231" refid="structvrna__mx__pf__s_1af3ef433500adebc8ca0a35b5e2bfccfa" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/><ref refid="group__dp__matrices_1ga6042ea1d58d01931e959791be6d89343" kindref="member">vrna_mx_type_e</ref><sp/><sp/><ref refid="structvrna__mx__pf__s_1af3ef433500adebc8ca0a35b5e2bfccfa" kindref="member">type</ref>;<sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="232" refid="structvrna__mx__pf__s_1a798f72ece3f3f970bb0de2120600ad63" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="structvrna__mx__pf__s_1a798f72ece3f3f970bb0de2120600ad63" kindref="member">length</ref>;<sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="233" refid="structvrna__mx__pf__s_1a133ac57938cb0969da254a594572baf8" refkind="member"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*<ref refid="structvrna__mx__pf__s_1a133ac57938cb0969da254a594572baf8" kindref="member">scale</ref>;<sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="234" refid="structvrna__mx__pf__s_1ae18e83833416f62943d5dd7be1cc038f" refkind="member"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*<ref refid="structvrna__mx__pf__s_1ae18e83833416f62943d5dd7be1cc038f" kindref="member">expMLbase</ref>;<sp/></highlight></codeline>
<codeline lineno="235"><highlight class="normal"></highlight></codeline>
<codeline lineno="239"><highlight class="normal"></highlight></codeline>
<codeline lineno="240"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_C11_FEATURES</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="241"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>C11<sp/>support<sp/>for<sp/>unnamed<sp/>unions/structs<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="242"><highlight class="normal"><sp/><sp/></highlight><highlight class="keyword">union<sp/></highlight><highlight class="normal">{</highlight></codeline>
<codeline lineno="243"><highlight class="normal"><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal">{</highlight></codeline>
<codeline lineno="244"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="245"><highlight class="normal"></highlight></codeline>
<codeline lineno="251"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*q;</highlight></codeline>
<codeline lineno="252"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*qb;</highlight></codeline>
<codeline lineno="253"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*qm;</highlight></codeline>
<codeline lineno="254"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*qm1;</highlight></codeline>
<codeline lineno="255"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*probs;</highlight></codeline>
<codeline lineno="256"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*q1k;</highlight></codeline>
<codeline lineno="257"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*qln;</highlight></codeline>
<codeline lineno="258"><highlight class="normal"><sp/><sp/>vrna_smx_csr(<ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref>)<sp/>*q_gq;<sp/></highlight></codeline>
<codeline lineno="259"><highlight class="normal"><sp/><sp/>vrna_smx_csr(<ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref>)<sp/>*p_gq;<sp/></highlight></codeline>
<codeline lineno="260"><highlight class="normal"></highlight></codeline>
<codeline lineno="261"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>qo;</highlight></codeline>
<codeline lineno="262"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*qm2;</highlight></codeline>
<codeline lineno="263"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*qm2_real;</highlight></codeline>
<codeline lineno="264"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*qm1_new;</highlight></codeline>
<codeline lineno="265"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>qho;</highlight></codeline>
<codeline lineno="266"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>qio;</highlight></codeline>
<codeline lineno="267"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>qmo;</highlight></codeline>
<codeline lineno="268"><highlight class="normal"></highlight></codeline>
<codeline lineno="272"><highlight class="normal"></highlight></codeline>
<codeline lineno="273"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_C11_FEATURES</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="274"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>C11<sp/>support<sp/>for<sp/>unnamed<sp/>unions/structs<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="275"><highlight class="normal">};</highlight></codeline>
<codeline lineno="276"><highlight class="normal"></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal">{</highlight></codeline>
<codeline lineno="277"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="278"><highlight class="normal"></highlight></codeline>
<codeline lineno="284"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**q_local;</highlight></codeline>
<codeline lineno="285"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**qb_local;</highlight></codeline>
<codeline lineno="286"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**qm_local;</highlight></codeline>
<codeline lineno="287"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**pR;</highlight></codeline>
<codeline lineno="288"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**qm2_local;</highlight></codeline>
<codeline lineno="289"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**QI5;</highlight></codeline>
<codeline lineno="290"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**q2l;</highlight></codeline>
<codeline lineno="291"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**qmb;</highlight></codeline>
<codeline lineno="292"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**G_local;</highlight></codeline>
<codeline lineno="296"><highlight class="normal"></highlight></codeline>
<codeline lineno="297"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_C11_FEATURES</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="298"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>C11<sp/>support<sp/>for<sp/>unnamed<sp/>unions/structs<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="299"><highlight class="normal">};</highlight></codeline>
<codeline lineno="300"><highlight class="normal"></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal">{</highlight></codeline>
<codeline lineno="301"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="302"><highlight class="normal"></highlight></codeline>
<codeline lineno="308"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>***Q;</highlight></codeline>
<codeline lineno="309"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_min_Q;</highlight></codeline>
<codeline lineno="310"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_max_Q;</highlight></codeline>
<codeline lineno="311"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_min_Q;</highlight></codeline>
<codeline lineno="312"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_max_Q;</highlight></codeline>
<codeline lineno="313"><highlight class="normal"></highlight></codeline>
<codeline lineno="314"><highlight class="normal"></highlight></codeline>
<codeline lineno="315"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>***Q_B;</highlight></codeline>
<codeline lineno="316"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_min_Q_B;</highlight></codeline>
<codeline lineno="317"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_max_Q_B;</highlight></codeline>
<codeline lineno="318"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_min_Q_B;</highlight></codeline>
<codeline lineno="319"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_max_Q_B;</highlight></codeline>
<codeline lineno="320"><highlight class="normal"></highlight></codeline>
<codeline lineno="321"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>***Q_M;</highlight></codeline>
<codeline lineno="322"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_min_Q_M;</highlight></codeline>
<codeline lineno="323"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_max_Q_M;</highlight></codeline>
<codeline lineno="324"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_min_Q_M;</highlight></codeline>
<codeline lineno="325"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_max_Q_M;</highlight></codeline>
<codeline lineno="326"><highlight class="normal"></highlight></codeline>
<codeline lineno="327"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>***Q_M1;</highlight></codeline>
<codeline lineno="328"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_min_Q_M1;</highlight></codeline>
<codeline lineno="329"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_max_Q_M1;</highlight></codeline>
<codeline lineno="330"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_min_Q_M1;</highlight></codeline>
<codeline lineno="331"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_max_Q_M1;</highlight></codeline>
<codeline lineno="332"><highlight class="normal"></highlight></codeline>
<codeline lineno="333"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>***Q_M2;</highlight></codeline>
<codeline lineno="334"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_min_Q_M2;</highlight></codeline>
<codeline lineno="335"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>**l_max_Q_M2;</highlight></codeline>
<codeline lineno="336"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_min_Q_M2;</highlight></codeline>
<codeline lineno="337"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*k_max_Q_M2;</highlight></codeline>
<codeline lineno="338"><highlight class="normal"></highlight></codeline>
<codeline lineno="339"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**Q_c;</highlight></codeline>
<codeline lineno="340"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*l_min_Q_c;</highlight></codeline>
<codeline lineno="341"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*l_max_Q_c;</highlight></codeline>
<codeline lineno="342"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>k_min_Q_c;</highlight></codeline>
<codeline lineno="343"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>k_max_Q_c;</highlight></codeline>
<codeline lineno="344"><highlight class="normal"></highlight></codeline>
<codeline lineno="345"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**Q_cH;</highlight></codeline>
<codeline lineno="346"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*l_min_Q_cH;</highlight></codeline>
<codeline lineno="347"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*l_max_Q_cH;</highlight></codeline>
<codeline lineno="348"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>k_min_Q_cH;</highlight></codeline>
<codeline lineno="349"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>k_max_Q_cH;</highlight></codeline>
<codeline lineno="350"><highlight class="normal"></highlight></codeline>
<codeline lineno="351"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**Q_cI;</highlight></codeline>
<codeline lineno="352"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*l_min_Q_cI;</highlight></codeline>
<codeline lineno="353"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*l_max_Q_cI;</highlight></codeline>
<codeline lineno="354"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>k_min_Q_cI;</highlight></codeline>
<codeline lineno="355"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>k_max_Q_cI;</highlight></codeline>
<codeline lineno="356"><highlight class="normal"></highlight></codeline>
<codeline lineno="357"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>**Q_cM;</highlight></codeline>
<codeline lineno="358"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*l_min_Q_cM;</highlight></codeline>
<codeline lineno="359"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>*l_max_Q_cM;</highlight></codeline>
<codeline lineno="360"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>k_min_Q_cM;</highlight></codeline>
<codeline lineno="361"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>k_max_Q_cM;</highlight></codeline>
<codeline lineno="362"><highlight class="normal"></highlight></codeline>
<codeline lineno="363"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>auxilary<sp/>arrays<sp/>for<sp/>remaining<sp/>set<sp/>of<sp/>coarse<sp/>graining<sp/>(k,l)<sp/>&gt;<sp/>(k_max,<sp/>l_max)<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="364"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*Q_rem;</highlight></codeline>
<codeline lineno="365"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*Q_B_rem;</highlight></codeline>
<codeline lineno="366"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*Q_M_rem;</highlight></codeline>
<codeline lineno="367"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*Q_M1_rem;</highlight></codeline>
<codeline lineno="368"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*Q_M2_rem;</highlight></codeline>
<codeline lineno="369"><highlight class="normal"></highlight></codeline>
<codeline lineno="370"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>Q_c_rem;</highlight></codeline>
<codeline lineno="371"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>Q_cH_rem;</highlight></codeline>
<codeline lineno="372"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>Q_cI_rem;</highlight></codeline>
<codeline lineno="373"><highlight class="normal"><sp/><sp/><ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>Q_cM_rem;</highlight></codeline>
<codeline lineno="377"><highlight class="normal"></highlight></codeline>
<codeline lineno="378"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_C11_FEATURES</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="379"><highlight class="normal"><sp/><sp/></highlight><highlight class="comment">/*<sp/>C11<sp/>support<sp/>for<sp/>unnamed<sp/>unions/structs<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="380"><highlight class="normal">};</highlight></codeline>
<codeline lineno="381"><highlight class="normal">};</highlight></codeline>
<codeline lineno="382"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="383"><highlight class="normal">};</highlight></codeline>
<codeline lineno="384"><highlight class="normal"></highlight></codeline>
<codeline lineno="414"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="415" refid="group__dp__matrices_1ga87ffa61e95e5dd3ad34d8c6fa95d4514" refkind="member"><highlight class="normal"><ref refid="group__dp__matrices_1ga87ffa61e95e5dd3ad34d8c6fa95d4514" kindref="member">vrna_mx_add</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="416"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__dp__matrices_1ga6042ea1d58d01931e959791be6d89343" kindref="member">vrna_mx_type_e</ref><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>type,</highlight></codeline>
<codeline lineno="417"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="418"><highlight class="normal"></highlight></codeline>
<codeline lineno="419"><highlight class="normal"></highlight></codeline>
<codeline lineno="420"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="421"><highlight class="normal">vrna_mx_mfe_add(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="422"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__dp__matrices_1ga6042ea1d58d01931e959791be6d89343" kindref="member">vrna_mx_type_e</ref><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>mx_type,</highlight></codeline>
<codeline lineno="423"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="424"><highlight class="normal"></highlight></codeline>
<codeline lineno="425"><highlight class="normal"></highlight></codeline>
<codeline lineno="426"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="427"><highlight class="normal">vrna_mx_pf_add(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/>*fc,</highlight></codeline>
<codeline lineno="428"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__dp__matrices_1ga6042ea1d58d01931e959791be6d89343" kindref="member">vrna_mx_type_e</ref><sp/><sp/><sp/><sp/><sp/><sp/><sp/>mx_type,</highlight></codeline>
<codeline lineno="429"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="430"><highlight class="normal"></highlight></codeline>
<codeline lineno="431"><highlight class="normal"></highlight></codeline>
<codeline lineno="432"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="433"><highlight class="normal">vrna_mx_prepare(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="434"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="435"><highlight class="normal"></highlight></codeline>
<codeline lineno="436"><highlight class="normal"></highlight></codeline>
<codeline lineno="444"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="445" refid="group__dp__matrices_1gaf429b1838e68cb677db6aef7e8f0ffc8" refkind="member"><highlight class="normal"><ref refid="group__dp__matrices_1gaf429b1838e68cb677db6aef7e8f0ffc8" kindref="member">vrna_mx_mfe_free</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/>*fc);</highlight></codeline>
<codeline lineno="446"><highlight class="normal"></highlight></codeline>
<codeline lineno="447"><highlight class="normal"></highlight></codeline>
<codeline lineno="455"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="456" refid="group__dp__matrices_1gab9d4eaceb36345b71d349b12787c5e0a" refkind="member"><highlight class="normal"><ref refid="group__dp__matrices_1gab9d4eaceb36345b71d349b12787c5e0a" kindref="member">vrna_mx_pf_free</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/>*fc);</highlight></codeline>
<codeline lineno="457"><highlight class="normal"></highlight></codeline>
<codeline lineno="458"><highlight class="normal"></highlight></codeline>
<codeline lineno="462"><highlight class="normal"></highlight></codeline>
<codeline lineno="463"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/datastructures/dp_matrices.h"/>
  </compounddef>
</doxygen>
