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    <includes refid="basepairs_8h" local="no">ViennaRNA/probabilities/basepairs.h</includes>
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    <sectiondef kind="define">
      <memberdef kind="define" id="part__func__co_8h_1aab347a3c03fbe8e7319551b9fa0cce4a" prot="public" static="no">
        <name>DEPRECATED</name>
        <param><defname>func   </defname></param>
        <param><defname>msg</defname></param>
        <initializer>func</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/part_func_co.h" line="13" column="11" bodyfile="ViennaRNA/part_func_co.h" bodystart="13" bodyend="-1"/>
      </memberdef>
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    <sectiondef kind="var">
      <member refid="group__pf__cofold_1gaff27888c4088cc1f60fd59cbd589474c" kind="variable"><name>mirnatog</name></member>
      <member refid="group__pf__cofold_1gac2d1851a710a8561390861155ca988fe" kind="variable"><name>F_monomer</name></member>
    </sectiondef>
    <sectiondef kind="func">
      <member refid="group__part__func__global__deprecated_1gae5c1e7331718669bdae7a86de2be6184" kind="function"><name>co_pf_fold</name></member>
      <member refid="group__part__func__global__deprecated_1gaabfc6cb6d02b8f08ac4c92f4f5b125d9" kind="function"><name>co_pf_fold_par</name></member>
      <memberdef kind="function" id="part__func__co_8h_1ab978ec3cc69b1082bcbbb016a26c00d0" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type><ref refid="group__struct__utils__plist_1gab9ac98ab55ded9fb90043b024b915aca" kindref="member">vrna_ep_t</ref> *</type>
        <definition>vrna_ep_t * get_plist</definition>
        <argsstring>(vrna_ep_t *pl, int length, double cut_off)</argsstring>
        <name>get_plist</name>
        <param>
          <type><ref refid="group__struct__utils__plist_1gab9ac98ab55ded9fb90043b024b915aca" kindref="member">vrna_ep_t</ref> *</type>
          <declname>pl</declname>
        </param>
        <param>
          <type>int</type>
          <declname>length</declname>
        </param>
        <param>
          <type>double</type>
          <declname>cut_off</declname>
        </param>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
<para>DO NOT USE THIS FUNCTION ANYMORE <xrefsect id="deprecated_1_deprecated000098"><xreftitle>Deprecated</xreftitle><xrefdescription><para>use <ref refid="group__part__func__global__deprecated_1ga1cc05aaa9b0e7df2d3887e98321c2030" kindref="member">assign_plist_from_pr()</ref> instead! </para>
</xrefdescription></xrefsect></para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/part_func_co.h" line="117" column="12" declfile="ViennaRNA/part_func_co.h" declline="117" declcolumn="12"/>
      </memberdef>
      <member refid="group__part__func__global__deprecated_1ga94c19120130e66a667a10a3c8598550c" kind="function"><name>compute_probabilities</name></member>
      <member refid="group__part__func__global__deprecated_1gaa12dda9dd6179cdd22bcce87c0682c07" kind="function"><name>init_co_pf_fold</name></member>
      <member refid="group__part__func__global__deprecated_1gaa06ab81cec7fe070bfe4e3c7e8a19afb" kind="function"><name>export_co_bppm</name></member>
      <member refid="group__part__func__global__deprecated_1gade3ce34ae8214811374b1d28a40dc247" kind="function"><name>free_co_pf_arrays</name></member>
      <member refid="group__part__func__global__deprecated_1ga6e0f36c1f9b7d9dd4bfbad914c1119e5" kind="function"><name>update_co_pf_params</name></member>
      <member refid="group__part__func__global__deprecated_1ga75465d7e8793db68a434d83df9a2e794" kind="function"><name>update_co_pf_params_par</name></member>
    </sectiondef>
    <briefdescription>
<para>Partition function for two RNA sequences. </para>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_PART_FUNC_CO_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_PART_FUNC_CO_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight></codeline>
<codeline lineno="4"><highlight class="normal"></highlight><highlight class="preprocessor">#ifdef<sp/>VRNA_WARN_DEPRECATED</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="5"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>if<sp/>defined(__clang__)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="6"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func<sp/>__attribute__<sp/>((deprecated(&quot;&quot;,<sp/>msg)))</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="7"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>elif<sp/>defined(__GNUC__)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="8"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func<sp/>__attribute__<sp/>((deprecated(msg)))</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>else</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="10"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="11"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="12"><highlight class="normal"></highlight><highlight class="preprocessor">#else</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="13"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="14"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="15"><highlight class="normal"></highlight></codeline>
<codeline lineno="21"><highlight class="normal"></highlight></codeline>
<codeline lineno="26"><highlight class="normal"></highlight></codeline>
<codeline lineno="27"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="datastructures_2basic_8h" kindref="compound">ViennaRNA/datastructures/basic.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="28"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="params_2basic_8h" kindref="compound">ViennaRNA/params/basic.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="29"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="partfunc_2global_8h" kindref="compound">ViennaRNA/partfunc/global.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="30"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="probabilities_2structures_8h" kindref="compound">ViennaRNA/probabilities/structures.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="31"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="basepairs_8h" kindref="compound">ViennaRNA/probabilities/basepairs.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="32"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="concentrations_8h" kindref="compound">ViennaRNA/concentrations.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="33"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="problist_8h" kindref="compound">ViennaRNA/structures/problist.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="34"><highlight class="normal"></highlight></codeline>
<codeline lineno="38"><highlight class="normal"></highlight><highlight class="keyword">extern</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><ref refid="group__pf__cofold_1gaff27888c4088cc1f60fd59cbd589474c" kindref="member">mirnatog</ref>;</highlight></codeline>
<codeline lineno="39"><highlight class="normal"></highlight></codeline>
<codeline lineno="43"><highlight class="normal"></highlight><highlight class="keyword">extern</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><ref refid="group__pf__cofold_1gac2d1851a710a8561390861155ca988fe" kindref="member">F_monomer</ref>[2];</highlight></codeline>
<codeline lineno="44"><highlight class="normal"></highlight></codeline>
<codeline lineno="48"><highlight class="normal"></highlight></codeline>
<codeline lineno="49"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_BACKWARD_COMPATIBILITY</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="50"><highlight class="normal"></highlight></codeline>
<codeline lineno="51"><highlight class="normal"></highlight><highlight class="comment">/*</highlight></codeline>
<codeline lineno="52"><highlight class="comment"><sp/>#################################################</highlight></codeline>
<codeline lineno="53"><highlight class="comment"><sp/>#<sp/>DEPRECATED<sp/>FUNCTIONS<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>#</highlight></codeline>
<codeline lineno="54"><highlight class="comment"><sp/>#################################################</highlight></codeline>
<codeline lineno="55"><highlight class="comment"><sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="56"><highlight class="normal"></highlight></codeline>
<codeline lineno="77"><highlight class="normal">DEPRECATED(<ref refid="group__pf__cofold_1ga444df1587c9a2ca15b8eb25188f629c3" kindref="member">vrna_dimer_pf_t</ref><sp/><ref refid="group__part__func__global__deprecated_1gae5c1e7331718669bdae7a86de2be6184" kindref="member">co_pf_fold</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*sequence,</highlight></codeline>
<codeline lineno="78"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*structure),</highlight></codeline>
<codeline lineno="79" refid="group__part__func__global__deprecated_1gae5c1e7331718669bdae7a86de2be6184" refkind="member"><highlight class="normal"></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_pf_co_fold()<sp/>or<sp/>vrna_pf_dimer()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="80"><highlight class="normal"></highlight></codeline>
<codeline lineno="102"><highlight class="normal">DEPRECATED(<ref refid="group__pf__cofold_1ga444df1587c9a2ca15b8eb25188f629c3" kindref="member">vrna_dimer_pf_t</ref><sp/><ref refid="group__part__func__global__deprecated_1gaabfc6cb6d02b8f08ac4c92f4f5b125d9" kindref="member">co_pf_fold_par</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*sequence,</highlight></codeline>
<codeline lineno="103"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*structure,</highlight></codeline>
<codeline lineno="104"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__energy__parameters_1ga01d8b92fe734df8d79a6169482c7d8d8" kindref="member">vrna_exp_param_t</ref><sp/><sp/>*parameters,</highlight></codeline>
<codeline lineno="105"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>calculate_bppm,</highlight></codeline>
<codeline lineno="106"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>is_constrained),</highlight></codeline>
<codeline lineno="107" refid="group__part__func__global__deprecated_1gaabfc6cb6d02b8f08ac4c92f4f5b125d9" refkind="member"><highlight class="normal"></highlight><highlight class="stringliteral">&quot;Use<sp/>the<sp/>new<sp/>API<sp/>and<sp/>vrna_pf_dimer()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="108"><highlight class="normal"></highlight></codeline>
<codeline lineno="114"><highlight class="normal">DEPRECATED(<ref refid="group__struct__utils__plist_1gab9ac98ab55ded9fb90043b024b915aca" kindref="member">vrna_ep_t</ref><sp/>*<ref refid="part__func__co_8h_1ab978ec3cc69b1082bcbbb016a26c00d0" kindref="member">get_plist</ref>(<ref refid="group__struct__utils__plist_1gab9ac98ab55ded9fb90043b024b915aca" kindref="member">vrna_ep_t</ref><sp/>*pl,</highlight></codeline>
<codeline lineno="115"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>length,</highlight></codeline>
<codeline lineno="116"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>cut_off),</highlight></codeline>
<codeline lineno="117" refid="part__func__co_8h_1ab978ec3cc69b1082bcbbb016a26c00d0" refkind="member"><highlight class="normal"></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_plist()<sp/>and<sp/>vrna_plist_from_probs()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="118"><highlight class="normal"></highlight></codeline>
<codeline lineno="140"><highlight class="normal">DEPRECATED(</highlight><highlight class="keywordtype">void</highlight><highlight class="normal"><sp/><ref refid="group__part__func__global__deprecated_1ga94c19120130e66a667a10a3c8598550c" kindref="member">compute_probabilities</ref>(</highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>FAB,</highlight></codeline>
<codeline lineno="141"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>FEA,</highlight></codeline>
<codeline lineno="142"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>FEB,</highlight></codeline>
<codeline lineno="143"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__struct__utils__plist_1gab9ac98ab55ded9fb90043b024b915aca" kindref="member">vrna_ep_t</ref><sp/>*prAB,</highlight></codeline>
<codeline lineno="144"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__struct__utils__plist_1gab9ac98ab55ded9fb90043b024b915aca" kindref="member">vrna_ep_t</ref><sp/>*prA,</highlight></codeline>
<codeline lineno="145"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__struct__utils__plist_1gab9ac98ab55ded9fb90043b024b915aca" kindref="member">vrna_ep_t</ref><sp/>*prB,</highlight></codeline>
<codeline lineno="146"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>Alength),</highlight></codeline>
<codeline lineno="147" refid="group__part__func__global__deprecated_1ga94c19120130e66a667a10a3c8598550c" refkind="member"><highlight class="normal"></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_pf_dimer_probs()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="148"><highlight class="normal"></highlight></codeline>
<codeline lineno="154"><highlight class="normal">DEPRECATED(</highlight><highlight class="keywordtype">void</highlight><highlight class="normal"><sp/><sp/><sp/><ref refid="group__part__func__global__deprecated_1gaa12dda9dd6179cdd22bcce87c0682c07" kindref="member">init_co_pf_fold</ref>(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>length),</highlight></codeline>
<codeline lineno="155" refid="group__part__func__global__deprecated_1gaa12dda9dd6179cdd22bcce87c0682c07" refkind="member"><highlight class="normal"></highlight><highlight class="stringliteral">&quot;This<sp/>function<sp/>is<sp/>obsolete&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="156"><highlight class="normal"></highlight></codeline>
<codeline lineno="173"><highlight class="normal">DEPRECATED(<ref refid="group__data__structures_1ga31125aeace516926bf7f251f759b6126" kindref="member">FLT_OR_DBL</ref><sp/>*<ref refid="group__part__func__global__deprecated_1gaa06ab81cec7fe070bfe4e3c7e8a19afb" kindref="member">export_co_bppm</ref>(</highlight><highlight class="keywordtype">void</highlight><highlight class="normal">),</highlight></codeline>
<codeline lineno="174" refid="group__part__func__global__deprecated_1gaa06ab81cec7fe070bfe4e3c7e8a19afb" refkind="member"><highlight class="normal"></highlight><highlight class="stringliteral">&quot;Use<sp/>the<sp/>new<sp/>API<sp/>with<sp/>vrna_fold_compound_t<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="175"><highlight class="normal"></highlight></codeline>
<codeline lineno="184"><highlight class="normal">DEPRECATED(</highlight><highlight class="keywordtype">void</highlight><highlight class="normal"><sp/><ref refid="group__part__func__global__deprecated_1gade3ce34ae8214811374b1d28a40dc247" kindref="member">free_co_pf_arrays</ref>(</highlight><highlight class="keywordtype">void</highlight><highlight class="normal">),</highlight></codeline>
<codeline lineno="185" refid="group__part__func__global__deprecated_1gade3ce34ae8214811374b1d28a40dc247" refkind="member"><highlight class="normal"></highlight><highlight class="stringliteral">&quot;This<sp/>function<sp/>is<sp/>obsolete&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="186"><highlight class="normal"></highlight></codeline>
<codeline lineno="199"><highlight class="normal">DEPRECATED(</highlight><highlight class="keywordtype">void</highlight><highlight class="normal"><sp/><ref refid="group__part__func__global__deprecated_1ga6e0f36c1f9b7d9dd4bfbad914c1119e5" kindref="member">update_co_pf_params</ref>(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>length),</highlight></codeline>
<codeline lineno="200" refid="group__part__func__global__deprecated_1ga6e0f36c1f9b7d9dd4bfbad914c1119e5" refkind="member"><highlight class="normal"></highlight><highlight class="stringliteral">&quot;This<sp/>function<sp/>is<sp/>obsolete&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="201"><highlight class="normal"></highlight></codeline>
<codeline lineno="223"><highlight class="normal">DEPRECATED(</highlight><highlight class="keywordtype">void</highlight><highlight class="normal"><sp/><ref refid="group__part__func__global__deprecated_1ga75465d7e8793db68a434d83df9a2e794" kindref="member">update_co_pf_params_par</ref>(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>length,</highlight></codeline>
<codeline lineno="224"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__energy__parameters_1ga01d8b92fe734df8d79a6169482c7d8d8" kindref="member">vrna_exp_param_t</ref><sp/><sp/>*parameters),</highlight></codeline>
<codeline lineno="225" refid="group__part__func__global__deprecated_1ga75465d7e8793db68a434d83df9a2e794" refkind="member"><highlight class="normal"></highlight><highlight class="stringliteral">&quot;Use<sp/>the<sp/>new<sp/>API<sp/>with<sp/>vrna_fold_compound_t<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="226"><highlight class="normal"></highlight></codeline>
<codeline lineno="227"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="228"><highlight class="normal"></highlight></codeline>
<codeline lineno="229"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/part_func_co.h"/>
  </compounddef>
</doxygen>
