<?xml version='1.0' encoding='UTF-8' standalone='no'?>
<doxygen xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="compound.xsd" version="1.15.0" xml:lang="en-US">
  <compounddef id="soft__special_8h" kind="file" language="C++">
    <compoundname>soft_special.h</compoundname>
    <sectiondef kind="define">
      <member refid="group__modified__bases_1gaf973a647d9109b874b563bbe399a662d" kind="define"><name>VRNA_SC_MOD_CHECK_FALLBACK</name></member>
      <member refid="group__modified__bases_1gaf80006636cdabb5f6ea577479a4cc3f2" kind="define"><name>VRNA_SC_MOD_CHECK_UNMOD</name></member>
      <member refid="group__modified__bases_1ga873ecdf39af24a547ad154aa39d7d0fe" kind="define"><name>VRNA_SC_MOD_SILENT</name></member>
      <member refid="group__modified__bases_1ga85bd7f50defa04f851e89a7554459d1e" kind="define"><name>VRNA_SC_MOD_DEFAULT</name></member>
    </sectiondef>
    <sectiondef kind="typedef">
      <member refid="group__modified__bases_1ga05e46c6a7c7040b2c4236b218dadb0e5" kind="typedef"><name>vrna_sc_mod_param_t</name></member>
    </sectiondef>
    <sectiondef kind="func">
      <member refid="group__modified__bases_1gae14753463c572d712363590b0b7e9a9a" kind="function"><name>vrna_sc_mod_read_from_jsonfile</name></member>
      <member refid="group__modified__bases_1ga73651701673a35080ff60ee156596da1" kind="function"><name>vrna_sc_mod_read_from_json</name></member>
      <member refid="group__modified__bases_1ga0e76e3dee44ab51c6758a5e2275f8bad" kind="function"><name>vrna_sc_mod_parameters_free</name></member>
      <member refid="group__modified__bases_1gaae866f0f52a26ba3cc839b560c6f756b" kind="function"><name>vrna_sc_mod_json</name></member>
      <member refid="group__modified__bases_1gaf19a7af41b081f19cb28e9e132330eeb" kind="function"><name>vrna_sc_mod_jsonfile</name></member>
      <member refid="group__modified__bases_1ga427d924951dd1a95b5828995208f96a9" kind="function"><name>vrna_sc_mod</name></member>
      <member refid="group__modified__bases_1ga09398dbc2ad61f0fbbe6724c8c90ed98" kind="function"><name>vrna_sc_mod_m6A</name></member>
      <member refid="group__modified__bases_1ga95dd8b18dfc80c6f5826464292d40f52" kind="function"><name>vrna_sc_mod_pseudouridine</name></member>
      <member refid="group__modified__bases_1gab4aba61d48c1b1577612794d3e8cd2b2" kind="function"><name>vrna_sc_mod_inosine</name></member>
      <member refid="group__modified__bases_1ga0430986f89b8292c9bc3764474e83411" kind="function"><name>vrna_sc_mod_7DA</name></member>
      <member refid="group__modified__bases_1gab1bb84d9c5a95740a35ee65694b1fbe2" kind="function"><name>vrna_sc_mod_purine</name></member>
      <member refid="group__modified__bases_1gae90b06aaa16f9a6f519e4b75d4d0c13d" kind="function"><name>vrna_sc_mod_dihydrouridine</name></member>
    </sectiondef>
    <briefdescription>
<para>Specialized implementations that utilize the soft constraint callback mechanism. </para>
    </briefdescription>
    <detaileddescription>
<para>, </para>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_CONSTRAINTS_SOFT_SPECIAL_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_CONSTRAINTS_SOFT_SPECIAL_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight></codeline>
<codeline lineno="10"><highlight class="normal"></highlight></codeline>
<codeline lineno="15"><highlight class="normal"></highlight></codeline>
<codeline lineno="22" refid="group__modified__bases_1ga05e46c6a7c7040b2c4236b218dadb0e5" refkind="member"><highlight class="normal"></highlight><highlight class="keyword">typedef</highlight><highlight class="normal"><sp/></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal"><ref refid="structvrna__sc__mod__param__s" kindref="compound">vrna_sc_mod_param_s</ref><sp/>*<ref refid="group__modified__bases_1ga05e46c6a7c7040b2c4236b218dadb0e5" kindref="member">vrna_sc_mod_param_t</ref>;</highlight></codeline>
<codeline lineno="23"><highlight class="normal"></highlight></codeline>
<codeline lineno="24"><highlight class="normal"></highlight></codeline>
<codeline lineno="37" refid="group__modified__bases_1gaf973a647d9109b874b563bbe399a662d" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_SC_MOD_CHECK_FALLBACK<sp/><sp/>1</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="38"><highlight class="normal"></highlight></codeline>
<codeline lineno="39"><highlight class="normal"></highlight></codeline>
<codeline lineno="52" refid="group__modified__bases_1gaf80006636cdabb5f6ea577479a4cc3f2" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_SC_MOD_CHECK_UNMOD<sp/><sp/><sp/><sp/><sp/>2</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="53"><highlight class="normal"></highlight></codeline>
<codeline lineno="61" refid="group__modified__bases_1ga873ecdf39af24a547ad154aa39d7d0fe" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_SC_MOD_SILENT<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>4</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="62"><highlight class="normal"></highlight></codeline>
<codeline lineno="63"><highlight class="normal"></highlight></codeline>
<codeline lineno="72" refid="group__modified__bases_1ga85bd7f50defa04f851e89a7554459d1e" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_SC_MOD_DEFAULT<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>(VRNA_SC_MOD_CHECK_FALLBACK<sp/>|<sp/>VRNA_SC_MOD_CHECK_UNMOD)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="73"><highlight class="normal"></highlight></codeline>
<codeline lineno="84"><highlight class="normal"><ref refid="group__modified__bases_1ga05e46c6a7c7040b2c4236b218dadb0e5" kindref="member">vrna_sc_mod_param_t</ref></highlight></codeline>
<codeline lineno="85" refid="group__modified__bases_1gae14753463c572d712363590b0b7e9a9a" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1gae14753463c572d712363590b0b7e9a9a" kindref="member">vrna_sc_mod_read_from_jsonfile</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*filename,</highlight></codeline>
<codeline lineno="86"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__model__details_1ga1f8a10e12a0a1915f2a4eff0b28ea17c" kindref="member">vrna_md_t</ref><sp/><sp/>*md);</highlight></codeline>
<codeline lineno="87"><highlight class="normal"></highlight></codeline>
<codeline lineno="88"><highlight class="normal"></highlight></codeline>
<codeline lineno="99"><highlight class="normal"><ref refid="group__modified__bases_1ga05e46c6a7c7040b2c4236b218dadb0e5" kindref="member">vrna_sc_mod_param_t</ref></highlight></codeline>
<codeline lineno="100" refid="group__modified__bases_1ga73651701673a35080ff60ee156596da1" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1ga73651701673a35080ff60ee156596da1" kindref="member">vrna_sc_mod_read_from_json</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*json,</highlight></codeline>
<codeline lineno="101"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__model__details_1ga1f8a10e12a0a1915f2a4eff0b28ea17c" kindref="member">vrna_md_t</ref><sp/><sp/>*md);</highlight></codeline>
<codeline lineno="102"><highlight class="normal"></highlight></codeline>
<codeline lineno="103"><highlight class="normal"></highlight></codeline>
<codeline lineno="111"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="112" refid="group__modified__bases_1ga0e76e3dee44ab51c6758a5e2275f8bad" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1ga0e76e3dee44ab51c6758a5e2275f8bad" kindref="member">vrna_sc_mod_parameters_free</ref>(<ref refid="group__modified__bases_1ga05e46c6a7c7040b2c4236b218dadb0e5" kindref="member">vrna_sc_mod_param_t</ref><sp/>params);</highlight></codeline>
<codeline lineno="113"><highlight class="normal"></highlight></codeline>
<codeline lineno="114"><highlight class="normal"></highlight></codeline>
<codeline lineno="135"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="136" refid="group__modified__bases_1gaae866f0f52a26ba3cc839b560c6f756b" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1gaae866f0f52a26ba3cc839b560c6f756b" kindref="member">vrna_sc_mod_json</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/>*fc,</highlight></codeline>
<codeline lineno="137"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*json,</highlight></codeline>
<codeline lineno="138"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/>*modification_sites,</highlight></codeline>
<codeline lineno="139"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="140"><highlight class="normal"></highlight></codeline>
<codeline lineno="141"><highlight class="normal"></highlight></codeline>
<codeline lineno="162"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="163" refid="group__modified__bases_1gaf19a7af41b081f19cb28e9e132330eeb" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1gaf19a7af41b081f19cb28e9e132330eeb" kindref="member">vrna_sc_mod_jsonfile</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/>*fc,</highlight></codeline>
<codeline lineno="164"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*json_file,</highlight></codeline>
<codeline lineno="165"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/>*modification_sites,</highlight></codeline>
<codeline lineno="166"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="167"><highlight class="normal"></highlight></codeline>
<codeline lineno="168"><highlight class="normal"></highlight></codeline>
<codeline lineno="192"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="193" refid="group__modified__bases_1ga427d924951dd1a95b5828995208f96a9" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1ga427d924951dd1a95b5828995208f96a9" kindref="member">vrna_sc_mod</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/><sp/><sp/><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="194"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/><ref refid="group__modified__bases_1ga05e46c6a7c7040b2c4236b218dadb0e5" kindref="member">vrna_sc_mod_param_t</ref><sp/>params,</highlight></codeline>
<codeline lineno="195"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*modification_sites,</highlight></codeline>
<codeline lineno="196"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="197"><highlight class="normal"></highlight></codeline>
<codeline lineno="198"><highlight class="normal"></highlight></codeline>
<codeline lineno="215"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="216" refid="group__modified__bases_1ga09398dbc2ad61f0fbbe6724c8c90ed98" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1ga09398dbc2ad61f0fbbe6724c8c90ed98" kindref="member">vrna_sc_mod_m6A</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="217"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>*modification_sites,</highlight></codeline>
<codeline lineno="218"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="219"><highlight class="normal"></highlight></codeline>
<codeline lineno="220"><highlight class="normal"></highlight></codeline>
<codeline lineno="237"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="238" refid="group__modified__bases_1ga95dd8b18dfc80c6f5826464292d40f52" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1ga95dd8b18dfc80c6f5826464292d40f52" kindref="member">vrna_sc_mod_pseudouridine</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="239"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>*modification_sites,</highlight></codeline>
<codeline lineno="240"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="241"><highlight class="normal"></highlight></codeline>
<codeline lineno="242"><highlight class="normal"></highlight></codeline>
<codeline lineno="259"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="260" refid="group__modified__bases_1gab4aba61d48c1b1577612794d3e8cd2b2" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1gab4aba61d48c1b1577612794d3e8cd2b2" kindref="member">vrna_sc_mod_inosine</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="261"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>*modification_sites,</highlight></codeline>
<codeline lineno="262"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="263"><highlight class="normal"></highlight></codeline>
<codeline lineno="264"><highlight class="normal"></highlight></codeline>
<codeline lineno="281"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="282" refid="group__modified__bases_1ga0430986f89b8292c9bc3764474e83411" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1ga0430986f89b8292c9bc3764474e83411" kindref="member">vrna_sc_mod_7DA</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="283"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>*modification_sites,</highlight></codeline>
<codeline lineno="284"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="285"><highlight class="normal"></highlight></codeline>
<codeline lineno="286"><highlight class="normal"></highlight></codeline>
<codeline lineno="303"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="304" refid="group__modified__bases_1gab1bb84d9c5a95740a35ee65694b1fbe2" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1gab1bb84d9c5a95740a35ee65694b1fbe2" kindref="member">vrna_sc_mod_purine</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/>*fc,</highlight></codeline>
<codeline lineno="305"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/>*modification_sites,</highlight></codeline>
<codeline lineno="306"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="307"><highlight class="normal"></highlight></codeline>
<codeline lineno="308"><highlight class="normal"></highlight></codeline>
<codeline lineno="325"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="326" refid="group__modified__bases_1gae90b06aaa16f9a6f519e4b75d4d0c13d" refkind="member"><highlight class="normal"><ref refid="group__modified__bases_1gae90b06aaa16f9a6f519e4b75d4d0c13d" kindref="member">vrna_sc_mod_dihydrouridine</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/>*fc,</highlight></codeline>
<codeline lineno="327"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/>*modification_sites,</highlight></codeline>
<codeline lineno="328"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="329"><highlight class="normal"></highlight></codeline>
<codeline lineno="330"><highlight class="normal"></highlight></codeline>
<codeline lineno="334"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/constraints/soft_special.h"/>
  </compounddef>
</doxygen>
