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        <link refid="findpath_8h"/>
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        <label>ViennaRNA/landscape/paths.h</label>
        <link refid="paths_8h"/>
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    <innerclass refid="structvrna__path__s" prot="public">vrna_path_s</innerclass>
    <sectiondef kind="define">
      <memberdef kind="define" id="paths_8h_1aab347a3c03fbe8e7319551b9fa0cce4a" prot="public" static="no">
        <name>DEPRECATED</name>
        <param><defname>func   </defname></param>
        <param><defname>msg</defname></param>
        <initializer>func</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/landscape/paths.h" line="13" column="11" bodyfile="ViennaRNA/landscape/paths.h" bodystart="13" bodyend="-1"/>
      </memberdef>
      <member refid="group__paths_1ga3e964156b52440b65fae5e2a48750d8e" kind="define"><name>VRNA_PATH_TYPE_DOT_BRACKET</name></member>
      <member refid="group__paths_1gaa73703da105dc6c98957fb8247c93f1f" kind="define"><name>VRNA_PATH_TYPE_MOVES</name></member>
    </sectiondef>
    <sectiondef kind="typedef">
      <member refid="group__paths_1ga818d4f3d1cf8723d6905990b08d909fe" kind="typedef"><name>vrna_path_t</name></member>
      <member refid="group__paths_1gaa99d8ec48f64de53eda0d51b1ed0d3d1" kind="typedef"><name>vrna_path_options_t</name></member>
      <member refid="group__paths__deprecated_1gab6b8737d5377e70a7815d04aae7fd884" kind="typedef"><name>path_t</name></member>
    </sectiondef>
    <sectiondef kind="func">
      <member refid="group__paths_1ga3763dc16760d09277a1b1c3f3061d0c7" kind="function"><name>vrna_path_free</name></member>
      <member refid="group__paths_1gaa64a86b13cb165346a0d0c788781512a" kind="function"><name>vrna_path_options_free</name></member>
      <member refid="group__paths__direct_1ga3790a24ca64d68acfa6e67b525151a5f" kind="function"><name>vrna_path_options_findpath</name></member>
      <member refid="group__paths__direct_1gacba096caf9a6fe134f33a5afcf2248d8" kind="function"><name>vrna_path_direct</name></member>
      <member refid="group__paths__direct_1ga51d9edaeb42d1d178ea8ba46ccd4c8c0" kind="function"><name>vrna_path_direct_ub</name></member>
    </sectiondef>
    <briefdescription>
<para>API for computing (optimal) (re-)folding paths between secondary structures. </para>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_PATHS_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_PATHS_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight></codeline>
<codeline lineno="4"><highlight class="normal"></highlight><highlight class="preprocessor">#ifdef<sp/>VRNA_WARN_DEPRECATED</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="5"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>if<sp/>defined(__clang__)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="6"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func<sp/>__attribute__<sp/>((deprecated(&quot;&quot;,<sp/>msg)))</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="7"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>elif<sp/>defined(__GNUC__)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="8"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func<sp/>__attribute__<sp/>((deprecated(msg)))</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>else</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="10"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="11"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="12"><highlight class="normal"></highlight><highlight class="preprocessor">#else</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="13"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="14"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="15"><highlight class="normal"></highlight></codeline>
<codeline lineno="21"><highlight class="normal"></highlight></codeline>
<codeline lineno="26"><highlight class="normal"></highlight></codeline>
<codeline lineno="30" refid="group__paths_1ga818d4f3d1cf8723d6905990b08d909fe" refkind="member"><highlight class="normal"></highlight><highlight class="keyword">typedef</highlight><highlight class="normal"><sp/></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal"><ref refid="structvrna__path__s" kindref="compound">vrna_path_s</ref><sp/><ref refid="group__paths_1ga818d4f3d1cf8723d6905990b08d909fe" kindref="member">vrna_path_t</ref>;</highlight></codeline>
<codeline lineno="31"><highlight class="normal"></highlight></codeline>
<codeline lineno="32"><highlight class="normal"></highlight></codeline>
<codeline lineno="37" refid="group__paths_1gaa99d8ec48f64de53eda0d51b1ed0d3d1" refkind="member"><highlight class="normal"></highlight><highlight class="keyword">typedef</highlight><highlight class="normal"><sp/></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal">vrna_path_options_s<sp/>*<ref refid="group__paths_1gaa99d8ec48f64de53eda0d51b1ed0d3d1" kindref="member">vrna_path_options_t</ref>;</highlight></codeline>
<codeline lineno="38"><highlight class="normal"></highlight></codeline>
<codeline lineno="39"><highlight class="normal"></highlight></codeline>
<codeline lineno="40"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_BACKWARD_COMPATIBILITY</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="41"><highlight class="normal"></highlight></codeline>
<codeline lineno="47"><highlight class="normal">DEPRECATED(</highlight><highlight class="keyword">typedef</highlight><highlight class="normal"><sp/></highlight><highlight class="keyword">struct</highlight><highlight class="normal"><sp/><ref refid="structvrna__path__s" kindref="compound">vrna_path_s</ref><sp/><ref refid="group__paths__deprecated_1gab6b8737d5377e70a7815d04aae7fd884" kindref="member">path_t</ref>,</highlight></codeline>
<codeline lineno="48" refid="group__paths__deprecated_1gab6b8737d5377e70a7815d04aae7fd884" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_path_t<sp/>instead!&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="49"><highlight class="normal"></highlight></codeline>
<codeline lineno="50"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="51"><highlight class="normal"></highlight></codeline>
<codeline lineno="52"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="fold__compound_8h" kindref="compound">ViennaRNA/fold_compound.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="53"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="move_8h" kindref="compound">ViennaRNA/landscape/move.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="54"><highlight class="normal"></highlight></codeline>
<codeline lineno="60" refid="group__paths_1ga3e964156b52440b65fae5e2a48750d8e" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/><sp/><sp/>VRNA_PATH_TYPE_DOT_BRACKET<sp/><sp/><sp/><sp/>1U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="61"><highlight class="normal"></highlight></codeline>
<codeline lineno="67" refid="group__paths_1gaa73703da105dc6c98957fb8247c93f1f" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/><sp/><sp/>VRNA_PATH_TYPE_MOVES<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>2U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="68"><highlight class="normal"></highlight></codeline>
<codeline lineno="98" refid="structvrna__path__s" refkind="compound"><highlight class="normal"></highlight><highlight class="keyword">struct<sp/></highlight><highlight class="normal"><ref refid="structvrna__path__s" kindref="compound">vrna_path_s</ref><sp/>{</highlight></codeline>
<codeline lineno="99" refid="structvrna__path__s_1a5fc9e0a7dc0e0f8ad67f24c18f2dc852" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><ref refid="structvrna__path__s_1a5fc9e0a7dc0e0f8ad67f24c18f2dc852" kindref="member">type</ref>;<sp/><sp/></highlight></codeline>
<codeline lineno="109" refid="structvrna__path__s_1ac25160bf31d28097358278f367e41227" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="structvrna__path__s_1ac25160bf31d28097358278f367e41227" kindref="member">en</ref>;<sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="110" refid="structvrna__path__s_1a141b70a59cb81d10bc65bbb7a0f6db77" refkind="member"><highlight class="normal"><sp/><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*<ref refid="structvrna__path__s_1a141b70a59cb81d10bc65bbb7a0f6db77" kindref="member">s</ref>;<sp/><sp/><sp/><sp/><sp/></highlight></codeline>
<codeline lineno="111" refid="structvrna__path__s_1a13da6bb5167362199947765b06a84005" refkind="member"><highlight class="normal"><sp/><sp/><ref refid="group__neighbors_1ga08630e00206cd163ea29c462bf5f4755" kindref="member">vrna_move_t</ref><sp/><ref refid="structvrna__path__s_1a13da6bb5167362199947765b06a84005" kindref="member">move</ref>;<sp/><sp/><sp/></highlight></codeline>
<codeline lineno="112"><highlight class="normal">};</highlight></codeline>
<codeline lineno="113"><highlight class="normal"></highlight></codeline>
<codeline lineno="114"><highlight class="normal"></highlight></codeline>
<codeline lineno="122"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="123" refid="group__paths_1ga3763dc16760d09277a1b1c3f3061d0c7" refkind="member"><highlight class="normal"><ref refid="group__paths_1ga3763dc16760d09277a1b1c3f3061d0c7" kindref="member">vrna_path_free</ref>(<ref refid="group__paths_1ga818d4f3d1cf8723d6905990b08d909fe" kindref="member">vrna_path_t</ref><sp/>*path);</highlight></codeline>
<codeline lineno="124"><highlight class="normal"></highlight></codeline>
<codeline lineno="125"><highlight class="normal"></highlight></codeline>
<codeline lineno="133"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="134" refid="group__paths_1gaa64a86b13cb165346a0d0c788781512a" refkind="member"><highlight class="normal"><ref refid="group__paths_1gaa64a86b13cb165346a0d0c788781512a" kindref="member">vrna_path_options_free</ref>(<ref refid="group__paths_1gaa99d8ec48f64de53eda0d51b1ed0d3d1" kindref="member">vrna_path_options_t</ref><sp/>options);</highlight></codeline>
<codeline lineno="135"><highlight class="normal"></highlight></codeline>
<codeline lineno="136"><highlight class="normal"></highlight></codeline>
<codeline lineno="138"><highlight class="normal"></highlight></codeline>
<codeline lineno="143"><highlight class="normal"></highlight></codeline>
<codeline lineno="144"><highlight class="normal"></highlight></codeline>
<codeline lineno="165"><highlight class="normal"><ref refid="group__paths_1gaa99d8ec48f64de53eda0d51b1ed0d3d1" kindref="member">vrna_path_options_t</ref></highlight></codeline>
<codeline lineno="166" refid="group__paths__direct_1ga3790a24ca64d68acfa6e67b525151a5f" refkind="member"><highlight class="normal"><ref refid="group__paths__direct_1ga3790a24ca64d68acfa6e67b525151a5f" kindref="member">vrna_path_options_findpath</ref>(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>width,</highlight></codeline>
<codeline lineno="167"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>type);</highlight></codeline>
<codeline lineno="168"><highlight class="normal"></highlight></codeline>
<codeline lineno="169"><highlight class="normal"></highlight></codeline>
<codeline lineno="195"><highlight class="normal"><ref refid="group__paths_1ga818d4f3d1cf8723d6905990b08d909fe" kindref="member">vrna_path_t</ref><sp/>*</highlight></codeline>
<codeline lineno="196" refid="group__paths__direct_1gacba096caf9a6fe134f33a5afcf2248d8" refkind="member"><highlight class="normal"><ref refid="group__paths__direct_1gacba096caf9a6fe134f33a5afcf2248d8" kindref="member">vrna_path_direct</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/>*fc,</highlight></codeline>
<codeline lineno="197"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*s1,</highlight></codeline>
<codeline lineno="198"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*s2,</highlight></codeline>
<codeline lineno="199"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__paths_1gaa99d8ec48f64de53eda0d51b1ed0d3d1" kindref="member">vrna_path_options_t</ref><sp/><sp/>options);</highlight></codeline>
<codeline lineno="200"><highlight class="normal"></highlight></codeline>
<codeline lineno="201"><highlight class="normal"></highlight></codeline>
<codeline lineno="224"><highlight class="normal"><ref refid="group__paths_1ga818d4f3d1cf8723d6905990b08d909fe" kindref="member">vrna_path_t</ref><sp/>*</highlight></codeline>
<codeline lineno="225" refid="group__paths__direct_1ga51d9edaeb42d1d178ea8ba46ccd4c8c0" refkind="member"><highlight class="normal"><ref refid="group__paths__direct_1ga51d9edaeb42d1d178ea8ba46ccd4c8c0" kindref="member">vrna_path_direct_ub</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="226"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*s1,</highlight></codeline>
<codeline lineno="227"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*s2,</highlight></codeline>
<codeline lineno="228"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>maxE,</highlight></codeline>
<codeline lineno="229"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__paths_1gaa99d8ec48f64de53eda0d51b1ed0d3d1" kindref="member">vrna_path_options_t</ref><sp/><sp/><sp/>options);</highlight></codeline>
<codeline lineno="230"><highlight class="normal"></highlight></codeline>
<codeline lineno="231"><highlight class="normal"></highlight></codeline>
<codeline lineno="233"><highlight class="normal"></highlight></codeline>
<codeline lineno="234"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/landscape/paths.h"/>
  </compounddef>
</doxygen>
