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  <compounddef id="structinteract" kind="struct" language="C++" prot="public">
    <compoundname>interact</compoundname>
    <includes refid="datastructures_2basic_8h" local="no">ViennaRNA/datastructures/basic.h</includes>
    <sectiondef kind="public-attrib">
      <memberdef kind="variable" id="structinteract_1a1fc8b3860c083f164daa9712690a3a56" prot="public" static="no" mutable="no">
        <type>double *</type>
        <definition>double* interact::Pi</definition>
        <argsstring></argsstring>
        <name>Pi</name>
        <qualifiedname>interact::Pi</qualifiedname>
        <briefdescription>
<para>probabilities of interaction </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/basic.h" line="196" column="11" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="196" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structinteract_1a54f8183542fff4c32ab7ace49a16c02c" prot="public" static="no" mutable="no">
        <type>double *</type>
        <definition>double* interact::Gi</definition>
        <argsstring></argsstring>
        <name>Gi</name>
        <qualifiedname>interact::Gi</qualifiedname>
        <briefdescription>
<para>free energies of interaction </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/basic.h" line="197" column="11" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="197" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structinteract_1ad58303190f9e085c3ab59890cbf61223" prot="public" static="no" mutable="no">
        <type>double</type>
        <definition>double interact::Gikjl</definition>
        <argsstring></argsstring>
        <name>Gikjl</name>
        <qualifiedname>interact::Gikjl</qualifiedname>
        <briefdescription>
<para>full free energy for interaction between [k,i] k&lt;i in longer seq and [j,l] j&lt;l in shorter seq </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/basic.h" line="198" column="11" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="198" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structinteract_1a41793812abae560805414761fec398fe" prot="public" static="no" mutable="no">
        <type>double</type>
        <definition>double interact::Gikjl_wo</definition>
        <argsstring></argsstring>
        <name>Gikjl_wo</name>
        <qualifiedname>interact::Gikjl_wo</qualifiedname>
        <briefdescription>
<para>Gikjl without contributions for prob_unpaired. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/basic.h" line="200" column="11" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="200" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structinteract_1ab6d031a21388be8763b75ea74c937f17" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int interact::i</definition>
        <argsstring></argsstring>
        <name>i</name>
        <qualifiedname>interact::i</qualifiedname>
        <briefdescription>
<para>k&lt;i in longer seq </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/basic.h" line="201" column="11" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="201" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structinteract_1a61e457fbf943d57364be6ddf1b4e7b8a" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int interact::k</definition>
        <argsstring></argsstring>
        <name>k</name>
        <qualifiedname>interact::k</qualifiedname>
        <briefdescription>
<para>k&lt;i in longer seq </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/basic.h" line="202" column="11" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="202" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structinteract_1a7555cb6363d1479341eb72b9c087aa34" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int interact::j</definition>
        <argsstring></argsstring>
        <name>j</name>
        <qualifiedname>interact::j</qualifiedname>
        <briefdescription>
<para>j&lt;l in shorter seq </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/basic.h" line="203" column="11" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="203" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structinteract_1a030ab45056342e12cb3955e4defd3904" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int interact::l</definition>
        <argsstring></argsstring>
        <name>l</name>
        <qualifiedname>interact::l</qualifiedname>
        <briefdescription>
<para>j&lt;l in shorter seq </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/basic.h" line="204" column="11" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="204" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structinteract_1ac9fcb5dca54ec5faa76e02b6488b9524" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int interact::length</definition>
        <argsstring></argsstring>
        <name>length</name>
        <qualifiedname>interact::length</qualifiedname>
        <briefdescription>
<para>length of longer sequence </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/basic.h" line="205" column="11" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="205" bodyend="-1"/>
      </memberdef>
    </sectiondef>
    <briefdescription>
<para>interaction data structure for RNAup </para>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
    <location file="ViennaRNA/datastructures/basic.h" line="195" column="1" bodyfile="ViennaRNA/datastructures/basic.h" bodystart="195" bodyend="206"/>
    <listofallmembers>
      <member refid="structinteract_1a54f8183542fff4c32ab7ace49a16c02c" prot="public" virt="non-virtual"><scope>interact</scope><name>Gi</name></member>
      <member refid="structinteract_1ad58303190f9e085c3ab59890cbf61223" prot="public" virt="non-virtual"><scope>interact</scope><name>Gikjl</name></member>
      <member refid="structinteract_1a41793812abae560805414761fec398fe" prot="public" virt="non-virtual"><scope>interact</scope><name>Gikjl_wo</name></member>
      <member refid="structinteract_1ab6d031a21388be8763b75ea74c937f17" prot="public" virt="non-virtual"><scope>interact</scope><name>i</name></member>
      <member refid="structinteract_1a7555cb6363d1479341eb72b9c087aa34" prot="public" virt="non-virtual"><scope>interact</scope><name>j</name></member>
      <member refid="structinteract_1a61e457fbf943d57364be6ddf1b4e7b8a" prot="public" virt="non-virtual"><scope>interact</scope><name>k</name></member>
      <member refid="structinteract_1a030ab45056342e12cb3955e4defd3904" prot="public" virt="non-virtual"><scope>interact</scope><name>l</name></member>
      <member refid="structinteract_1ac9fcb5dca54ec5faa76e02b6488b9524" prot="public" virt="non-virtual"><scope>interact</scope><name>length</name></member>
      <member refid="structinteract_1a1fc8b3860c083f164daa9712690a3a56" prot="public" virt="non-virtual"><scope>interact</scope><name>Pi</name></member>
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