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  <compounddef id="ribosum_8h" kind="file" language="C++">
    <compoundname>ribosum.h</compoundname>
    <includedby refid="alifold_8h" local="no">ViennaRNA/alifold.h</includedby>
    <includedby refid="ribo_8h" local="no">ViennaRNA/ribo.h</includedby>
    <invincdepgraph>
      <node id="2">
        <label>ViennaRNA/alifold.h</label>
        <link refid="alifold_8h"/>
      </node>
      <node id="1">
        <label>ViennaRNA/params/ribosum.h</label>
        <link refid="ribosum_8h"/>
        <childnode refid="2" relation="include">
        </childnode>
        <childnode refid="3" relation="include">
        </childnode>
      </node>
      <node id="3">
        <label>ViennaRNA/ribo.h</label>
        <link refid="ribo_8h"/>
      </node>
    </invincdepgraph>
    <sectiondef kind="func">
      <member refid="group__file__utils_1gafea21dc418a77f5fe583d63d9972da9f" kind="function"><name>get_ribosum</name></member>
      <member refid="group__file__utils_1gaa6abc35f1fc474c0826bae6c7ce51583" kind="function"><name>readribosum</name></member>
    </sectiondef>
    <briefdescription>
<para>Parse RiboSum Scoring Matrices for Covariance Scoring of Alignments. </para>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_RIBOSUM_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_RIBOSUM_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight></codeline>
<codeline lineno="10"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_BACKWARD_COMPATIBILITY</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="11"><highlight class="normal"></highlight></codeline>
<codeline lineno="16"><highlight class="normal"></highlight></codeline>
<codeline lineno="22" refid="group__file__utils_1gafea21dc418a77f5fe583d63d9972da9f" refkind="member"><highlight class="normal"></highlight><highlight class="keywordtype">float</highlight><highlight class="normal"><sp/>**<ref refid="group__file__utils_1gafea21dc418a77f5fe583d63d9972da9f" kindref="member">get_ribosum</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>**Alseq,</highlight></codeline>
<codeline lineno="23"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>n_seq,</highlight></codeline>
<codeline lineno="24"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>length);</highlight></codeline>
<codeline lineno="25"><highlight class="normal"></highlight></codeline>
<codeline lineno="26"><highlight class="normal"></highlight></codeline>
<codeline lineno="31" refid="group__file__utils_1gaa6abc35f1fc474c0826bae6c7ce51583" refkind="member"><highlight class="normal"></highlight><highlight class="keywordtype">float</highlight><highlight class="normal"><sp/>**<ref refid="group__file__utils_1gaa6abc35f1fc474c0826bae6c7ce51583" kindref="member">readribosum</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*name);</highlight></codeline>
<codeline lineno="32"><highlight class="normal"></highlight></codeline>
<codeline lineno="33"><highlight class="normal"></highlight></codeline>
<codeline lineno="37"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="38"><highlight class="normal"></highlight></codeline>
<codeline lineno="39"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/params/ribosum.h"/>
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