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        <name>DEPRECATED</name>
        <param><defname>func   </defname></param>
        <param><defname>msg</defname></param>
        <initializer>func</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <initializer>1000</initializer>
        <briefdescription>
<para>Maximum density of states discretization for subopt. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        </briefdescription>
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        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <initializer>1</initializer>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <initializer>2</initializer>
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        </briefdescription>
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        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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      <member refid="group__subopt__wuchty_1ga873cf8ed69e0437f8efa8b1fec854a0e" kind="variable"><name>subopt_sorted</name></member>
      <member refid="group__dos_1ga937634a76b46a22530a74906f1957a9e" kind="variable"><name>density_of_states</name></member>
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      <member refid="group__subopt__wuchty_1ga92c2e415167f9e2b0341989a74d24e41" kind="function"><name>vrna_subopt_cb</name></member>
      <member refid="group__subopt__wuchty_1ga9913b3a58b8d315be3f4f7f4dbe3c481" kind="function"><name>subopt</name></member>
      <member refid="group__subopt__wuchty_1gaf3597f13ed0e7dba00185f3336312f7c" kind="function"><name>subopt_par</name></member>
      <member refid="group__subopt__wuchty_1ga72ed97775f3e2ce2159fdcb994da383e" kind="function"><name>subopt_circ</name></member>
      <member refid="group__subopt__zuker_1ga6b9eca4eb5772eecee76a6bb188063c0" kind="function"><name>zukersubopt</name></member>
      <member refid="group__subopt__zuker_1gaf8d33bb499d66ef758db9c62cb0f6caa" kind="function"><name>zukersubopt_par</name></member>
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    <briefdescription>
<para>RNAsubopt and density of states declarations. </para>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="comment">/*<sp/>subopt.h<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_SUBOPT_WUCHTY_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_SUBOPT_WUCHTY_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="4"><highlight class="normal"></highlight></codeline>
<codeline lineno="5"><highlight class="normal"></highlight><highlight class="preprocessor">#ifdef<sp/>VRNA_WARN_DEPRECATED</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="6"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>if<sp/>defined(__clang__)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="7"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func<sp/>__attribute__<sp/>((deprecated(&quot;&quot;,<sp/>msg)))</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="8"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>elif<sp/>defined(__GNUC__)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func<sp/>__attribute__<sp/>((deprecated(msg)))</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="10"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>else</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="11"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="12"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="13"><highlight class="normal"></highlight><highlight class="preprocessor">#else</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="14"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="15"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="16"><highlight class="normal"></highlight></codeline>
<codeline lineno="22"><highlight class="normal"></highlight></codeline>
<codeline lineno="23"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;stdio.h&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="24"><highlight class="normal"></highlight></codeline>
<codeline lineno="25"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="datastructures_2basic_8h" kindref="compound">ViennaRNA/datastructures/basic.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="26"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="fold__compound_8h" kindref="compound">ViennaRNA/fold_compound.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="27"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="params_2basic_8h" kindref="compound">ViennaRNA/params/basic.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="28"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="subopt_2basic_8h" kindref="compound">ViennaRNA/subopt/basic.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="29"><highlight class="normal"></highlight></codeline>
<codeline lineno="30"><highlight class="normal"></highlight></codeline>
<codeline lineno="34" refid="wuchty_8h_1a5ec740b80afb4906ba4311dbd8ddbd89" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>MAXDOS<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>1000</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="35"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_UNSORTED<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>0</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="36"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_SORT_BY_ENERGY_LEXICOGRAPHIC_ASC<sp/><sp/><sp/>1</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="37"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_SORT_BY_ENERGY_ASC<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>2</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="38"><highlight class="normal"></highlight></codeline>
<codeline lineno="70"><highlight class="normal"><ref refid="subopt_2basic_8h_1a01ae9a0f27d245d89f705afd843fc457" kindref="member">vrna_subopt_solution_t</ref><sp/>*</highlight></codeline>
<codeline lineno="71" refid="group__subopt__wuchty_1gad0cce16455fda0737873d8e1c5846480" refkind="member"><highlight class="normal"><ref refid="group__subopt__wuchty_1gad0cce16455fda0737873d8e1c5846480" kindref="member">vrna_subopt</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/><sp/>*fc,</highlight></codeline>
<codeline lineno="72"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>delta,</highlight></codeline>
<codeline lineno="73"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>sorted,</highlight></codeline>
<codeline lineno="74"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>FILE<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*fp);</highlight></codeline>
<codeline lineno="75"><highlight class="normal"></highlight></codeline>
<codeline lineno="76"><highlight class="normal"></highlight></codeline>
<codeline lineno="112"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="113" refid="group__subopt__wuchty_1ga92c2e415167f9e2b0341989a74d24e41" refkind="member"><highlight class="normal"><ref refid="group__subopt__wuchty_1ga92c2e415167f9e2b0341989a74d24e41" kindref="member">vrna_subopt_cb</ref>(<ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref><sp/>*fc,</highlight></codeline>
<codeline lineno="114"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>delta,</highlight></codeline>
<codeline lineno="115"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__subopt__wuchty_1ga760ee7f326a411565f9e9f0cf44b2ff8" kindref="member">vrna_subopt_result_f</ref><sp/>cb,</highlight></codeline>
<codeline lineno="116"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*data);</highlight></codeline>
<codeline lineno="117"><highlight class="normal"></highlight></codeline>
<codeline lineno="118"><highlight class="normal"></highlight></codeline>
<codeline lineno="125"><highlight class="normal"></highlight><highlight class="keyword">extern</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">double</highlight><highlight class="normal"><sp/><ref refid="group__subopt__wuchty_1ga5e57d914bcb5feeecdf520e25313fcfe" kindref="member">print_energy</ref>;</highlight></codeline>
<codeline lineno="126"><highlight class="normal"></highlight></codeline>
<codeline lineno="133"><highlight class="normal"></highlight><highlight class="keyword">extern</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>subopt_sorted;</highlight></codeline>
<codeline lineno="134"><highlight class="normal"></highlight></codeline>
<codeline lineno="139"><highlight class="normal"></highlight></codeline>
<codeline lineno="152"><highlight class="normal"></highlight><highlight class="keyword">extern</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><ref refid="group__dos_1ga937634a76b46a22530a74906f1957a9e" kindref="member">density_of_states</ref>[<ref refid="wuchty_8h_1a5ec740b80afb4906ba4311dbd8ddbd89" kindref="member">MAXDOS</ref><sp/>+<sp/>1];</highlight></codeline>
<codeline lineno="153"><highlight class="normal"><sp/></highlight><highlight class="comment">/*<sp/>End<sp/>of<sp/>group<sp/>dos<sp/>*/</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="155"><highlight class="normal"></highlight></codeline>
<codeline lineno="156"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_BACKWARD_COMPATIBILITY</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="157"><highlight class="normal"></highlight></codeline>
<codeline lineno="175"><highlight class="normal">DEPRECATED(<ref refid="subopt_2basic_8h_1aa0f46ff02e1017469cf902d02ecd7f9a" kindref="member">SOLUTION</ref><sp/>*<sp/><ref refid="group__subopt__wuchty_1ga9913b3a58b8d315be3f4f7f4dbe3c481" kindref="member">subopt</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*seq,<sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*structure,<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>delta,<sp/>FILE<sp/>*<sp/>fp),</highlight></codeline>
<codeline lineno="176" refid="group__subopt__wuchty_1ga9913b3a58b8d315be3f4f7f4dbe3c481" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_subopt()<sp/>or<sp/>vrna_subopt_cb()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="177"><highlight class="normal"></highlight></codeline>
<codeline lineno="183"><highlight class="normal">DEPRECATED(<ref refid="subopt_2basic_8h_1aa0f46ff02e1017469cf902d02ecd7f9a" kindref="member">SOLUTION</ref><sp/>*</highlight></codeline>
<codeline lineno="184"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="group__subopt__wuchty_1gaf3597f13ed0e7dba00185f3336312f7c" kindref="member">subopt_par</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*seq,<sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*structure,<sp/><ref refid="group__energy__parameters_1ga8a69ca7d787e4fd6079914f5343a1f35" kindref="member">vrna_param_t</ref><sp/>*<sp/>parameters,<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>delta,</highlight></codeline>
<codeline lineno="185"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>is_constrained,</highlight></codeline>
<codeline lineno="186"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>is_circular,<sp/>FILE<sp/>*<sp/>fp),</highlight></codeline>
<codeline lineno="187" refid="group__subopt__wuchty_1gaf3597f13ed0e7dba00185f3336312f7c" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_subopt()<sp/>or<sp/>vrna_subopt_cb()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="188"><highlight class="normal"></highlight></codeline>
<codeline lineno="203"><highlight class="normal">DEPRECATED(<ref refid="subopt_2basic_8h_1aa0f46ff02e1017469cf902d02ecd7f9a" kindref="member">SOLUTION</ref><sp/>*<sp/><ref refid="group__subopt__wuchty_1ga72ed97775f3e2ce2159fdcb994da383e" kindref="member">subopt_circ</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*seq,<sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*sequence,<sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>delta,<sp/>FILE<sp/>*<sp/>fp),</highlight></codeline>
<codeline lineno="204" refid="group__subopt__wuchty_1ga72ed97775f3e2ce2159fdcb994da383e" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_subopt()<sp/>or<sp/>vrna_subopt_cb()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="205"><highlight class="normal"></highlight></codeline>
<codeline lineno="220"><highlight class="normal">DEPRECATED(<ref refid="subopt_2basic_8h_1aa0f46ff02e1017469cf902d02ecd7f9a" kindref="member">SOLUTION</ref><sp/>*<sp/><ref refid="group__subopt__zuker_1ga6b9eca4eb5772eecee76a6bb188063c0" kindref="member">zukersubopt</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">),</highlight></codeline>
<codeline lineno="221" refid="group__subopt__zuker_1ga6b9eca4eb5772eecee76a6bb188063c0" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_subopt_zuker()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="222"><highlight class="normal"></highlight></codeline>
<codeline lineno="231"><highlight class="normal">DEPRECATED(<ref refid="subopt_2basic_8h_1aa0f46ff02e1017469cf902d02ecd7f9a" kindref="member">SOLUTION</ref><sp/>*<sp/><ref refid="group__subopt__zuker_1gaf8d33bb499d66ef758db9c62cb0f6caa" kindref="member">zukersubopt_par</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">,<sp/><ref refid="group__energy__parameters_1ga8a69ca7d787e4fd6079914f5343a1f35" kindref="member">vrna_param_t</ref><sp/>*<sp/>parameters),</highlight></codeline>
<codeline lineno="232" refid="group__subopt__zuker_1gaf8d33bb499d66ef758db9c62cb0f6caa" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_subopt_zuker()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="233"><highlight class="normal"></highlight></codeline>
<codeline lineno="234"><highlight class="normal"></highlight></codeline>
<codeline lineno="235"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="236"><highlight class="normal"></highlight></codeline>
<codeline lineno="237"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/subopt/wuchty.h"/>
  </compounddef>
</doxygen>
