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  <compounddef id="structvrna__mx__mfe__s" kind="struct" language="C++" prot="public">
    <compoundname>vrna_mx_mfe_s</compoundname>
    <includes refid="datastructures_2dp__matrices_8h" local="no">ViennaRNA/datastructures/dp_matrices.h</includes>
    <sectiondef kind="user-defined">
      <header>Common fields for MFE matrices</header>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a9292754662fd36235ee949c6849932f5" prot="public" static="no" mutable="no">
        <type>const <ref refid="group__dp__matrices_1ga6042ea1d58d01931e959791be6d89343" kindref="member">vrna_mx_type_e</ref></type>
        <definition>const vrna_mx_type_e vrna_mx_mfe_s::type</definition>
        <argsstring></argsstring>
        <name>type</name>
        <qualifiedname>vrna_mx_mfe_s::type</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
<para>Type of the DP matrices </para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="68" column="25" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="68" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a1f92a8406fc1fb721dbf9193c34ad826" prot="public" static="no" mutable="no">
        <type>unsigned int</type>
        <definition>unsigned int vrna_mx_mfe_s::length</definition>
        <argsstring></argsstring>
        <name>length</name>
        <qualifiedname>vrna_mx_mfe_s::length</qualifiedname>
        <briefdescription>
<para>Length of the sequence, therefore an indicator of the size of the DP matrices. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="69" column="25" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="69" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a913f00490cd92f47cd726060743baeb8" prot="public" static="no" mutable="no">
        <type>unsigned int</type>
        <definition>unsigned int vrna_mx_mfe_s::strands</definition>
        <argsstring></argsstring>
        <name>strands</name>
        <qualifiedname>vrna_mx_mfe_s::strands</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
<para>Number of strands </para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="70" column="25" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="70" bodyend="-1"/>
      </memberdef>
    </sectiondef>
    <sectiondef kind="user-defined">
      <header>Default DP matrices</header>
      <description><para><simplesect kind="note"><para>These data fields are available if <programlisting><codeline><highlight class="normal"><ref refid="group__dp__matrices_1gae5aef35d016475e758f619b7bcb534f9" kindref="member">vrna_mx_mfe_t</ref>.<ref refid="structvrna__mx__mfe__s_1a9292754662fd36235ee949c6849932f5" kindref="member">type</ref><sp/>==<sp/><ref refid="group__dp__matrices_1gga6042ea1d58d01931e959791be6d89343aafa2568956dab79595521e20c49a5f75" kindref="member">VRNA_MX_DEFAULT</ref><sp/></highlight></codeline>
</programlisting> </para>
</simplesect>
</para>
</description>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a60a511fd42905ee4f046c56a76865bf9" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::c</definition>
        <argsstring></argsstring>
        <name>c</name>
        <qualifiedname>vrna_mx_mfe_s::c</qualifiedname>
        <briefdescription>
<para>Energy array, given that i-j pair. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="85" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="85" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1abebad693be987c2701d64477ab858039" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::f5</definition>
        <argsstring></argsstring>
        <name>f5</name>
        <qualifiedname>vrna_mx_mfe_s::f5</qualifiedname>
        <briefdescription>
<para>Energy of 5&apos; end. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="86" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="86" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a4ea4595a93733adef047ece8e6f5da52" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::f3</definition>
        <argsstring></argsstring>
        <name>f3</name>
        <qualifiedname>vrna_mx_mfe_s::f3</qualifiedname>
        <briefdescription>
<para>Energy of 3&apos; end. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="87" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="87" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1ae4f5e14d105d8e8dc3509c8e837f6a5c" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** vrna_mx_mfe_s::fms5</definition>
        <argsstring></argsstring>
        <name>fms5</name>
        <qualifiedname>vrna_mx_mfe_s::fms5</qualifiedname>
        <briefdescription>
<para>Energy for connected interstrand configurations. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="88" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="88" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1ac2a7cc51cf8c069259faf8d923a8f02d" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** vrna_mx_mfe_s::fms3</definition>
        <argsstring></argsstring>
        <name>fms3</name>
        <qualifiedname>vrna_mx_mfe_s::fms3</qualifiedname>
        <briefdescription>
<para>nergy for connected interstrand configurations </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="89" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="89" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a103995e4ab8e21e7f8bc36a6edcb1331" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::fML</definition>
        <argsstring></argsstring>
        <name>fML</name>
        <qualifiedname>vrna_mx_mfe_s::fML</qualifiedname>
        <briefdescription>
<para>Multi-loop auxiliary energy array. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="90" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="90" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1ae4e598d601f5ece6b8b4ffffcae2db06" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::fM1</definition>
        <argsstring></argsstring>
        <name>fM1</name>
        <qualifiedname>vrna_mx_mfe_s::fM1</qualifiedname>
        <briefdescription>
<para>Second ML array, only for unique multibrnach loop decomposition. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="91" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="91" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1ad29106e37d485b3f20b7be468e6c179c" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::fM2</definition>
        <argsstring></argsstring>
        <name>fM2</name>
        <qualifiedname>vrna_mx_mfe_s::fM2</qualifiedname>
        <briefdescription>
<para>Energy for a multibranch loop region with exactly two stems, extending to 3&apos; end. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="92" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="92" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a355bf57576fd63bea0bb95482802b667" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::fM1_new</definition>
        <argsstring></argsstring>
        <name>fM1_new</name>
        <qualifiedname>vrna_mx_mfe_s::fM1_new</qualifiedname>
        <briefdescription>
<para>ML array with exactly one component within 5&apos;end and i, ending at i (for circRNA). </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="93" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="93" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1af4724eeb875323dd41fbad8391a0aa2d" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::fM2_real</definition>
        <argsstring></argsstring>
        <name>fM2_real</name>
        <qualifiedname>vrna_mx_mfe_s::fM2_real</qualifiedname>
        <briefdescription>
<para>Energy for a multibranch loop region with at least two stems. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="94" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="94" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1ac6a22d71c6a0eccedf978372b19b458a" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int vrna_mx_mfe_s::Fc</definition>
        <argsstring></argsstring>
        <name>Fc</name>
        <qualifiedname>vrna_mx_mfe_s::Fc</qualifiedname>
        <briefdescription>
<para>Minimum Free Energy of entire circular RNA. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="96" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="96" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a1ba03c53ee2a32eaf8b46c0eb259e0c4" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int vrna_mx_mfe_s::FcH</definition>
        <argsstring></argsstring>
        <name>FcH</name>
        <qualifiedname>vrna_mx_mfe_s::FcH</qualifiedname>
        <briefdescription>
<para>Minimum Free Energy of hairpin loop cases in circular RNA. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="97" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="97" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a96ac173770c9745a30823fa17fe0b7f4" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int vrna_mx_mfe_s::FcI</definition>
        <argsstring></argsstring>
        <name>FcI</name>
        <qualifiedname>vrna_mx_mfe_s::FcI</qualifiedname>
        <briefdescription>
<para>Minimum Free Energy of internal loop cases in circular RNA. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="98" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="98" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a9a4bf70926f79372388eccc7e73759e9" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int vrna_mx_mfe_s::FcM</definition>
        <argsstring></argsstring>
        <name>FcM</name>
        <qualifiedname>vrna_mx_mfe_s::FcM</qualifiedname>
        <briefdescription>
<para>Minimum Free Energy of multibranch loop cases in circular RNA. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="99" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="99" bodyend="-1"/>
      </memberdef>
    </sectiondef>
    <sectiondef kind="user-defined">
      <header>Local Folding DP matrices using window approach</header>
      <description><para><simplesect kind="note"><para>These data fields are available if <programlisting><codeline><highlight class="normal"><ref refid="group__dp__matrices_1gae5aef35d016475e758f619b7bcb534f9" kindref="member">vrna_mx_mfe_t</ref>.<ref refid="structvrna__mx__mfe__s_1a9292754662fd36235ee949c6849932f5" kindref="member">type</ref><sp/>==<sp/><ref refid="group__dp__matrices_1gga6042ea1d58d01931e959791be6d89343a2ea5d5947f6ec02544934b0ff2785e99" kindref="member">VRNA_MX_WINDOW</ref><sp/></highlight></codeline>
</programlisting> </para>
</simplesect>
</para>
</description>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a116c677ece0832e6ab9cc2fd1ebfe452" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** vrna_mx_mfe_s::c_local</definition>
        <argsstring></argsstring>
        <name>c_local</name>
        <qualifiedname>vrna_mx_mfe_s::c_local</qualifiedname>
        <briefdescription>
<para>Energy array, given that i-j pair. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="114" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="114" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a6eae0a2b696b0c63bbaa78a70b950600" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::f3_local</definition>
        <argsstring></argsstring>
        <name>f3_local</name>
        <qualifiedname>vrna_mx_mfe_s::f3_local</qualifiedname>
        <briefdescription>
<para>Energy of 5&apos; end. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="115" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="115" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1ad37d705240a8e6b1e9a4e4ea19e74003" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** vrna_mx_mfe_s::fML_local</definition>
        <argsstring></argsstring>
        <name>fML_local</name>
        <qualifiedname>vrna_mx_mfe_s::fML_local</qualifiedname>
        <briefdescription>
<para>Multi-loop auxiliary energy array. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="116" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="116" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1afd3ea65bc8f06559f7f1ea79072fa385" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** vrna_mx_mfe_s::ggg_local</definition>
        <argsstring></argsstring>
        <name>ggg_local</name>
        <qualifiedname>vrna_mx_mfe_s::ggg_local</qualifiedname>
        <briefdescription>
<para>Energies of g-quadruplexes. </para>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="117" column="7" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="117" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1aacd92cb242d1a2e53b9cbbdf7be70ad7" prot="public" static="no" mutable="no">
        <type>unsigned int</type>
        <definition>unsigned int vrna_mx_mfe_s::ggg_local_shift</definition>
        <argsstring></argsstring>
        <name>ggg_local_shift</name>
        <qualifiedname>vrna_mx_mfe_s::ggg_local_shift</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="118" column="16" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="118" bodyend="-1"/>
      </memberdef>
    </sectiondef>
    <sectiondef kind="user-defined">
      <header>Distance Class DP matrices</header>
      <description><para><simplesect kind="note"><para>These data fields are available if <programlisting><codeline><highlight class="normal"><ref refid="group__dp__matrices_1gae5aef35d016475e758f619b7bcb534f9" kindref="member">vrna_mx_mfe_t</ref>.<ref refid="structvrna__mx__mfe__s_1a9292754662fd36235ee949c6849932f5" kindref="member">type</ref><sp/>==<sp/><ref refid="group__dp__matrices_1gga6042ea1d58d01931e959791be6d89343ae656f8391445ff71bed8a597a0a19417" kindref="member">VRNA_MX_2DFOLD</ref><sp/></highlight></codeline>
</programlisting> </para>
</simplesect>
</para>
</description>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1ab917aa1e2b069af7fb5d11c5d067cdf0" prot="public" static="no" mutable="no">
        <type>int ***</type>
        <definition>int*** vrna_mx_mfe_s::E_F5</definition>
        <argsstring></argsstring>
        <name>E_F5</name>
        <qualifiedname>vrna_mx_mfe_s::E_F5</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="133" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="133" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a4035d3c6a9e23e388ddec18a9fdc2315" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** vrna_mx_mfe_s::l_min_F5</definition>
        <argsstring></argsstring>
        <name>l_min_F5</name>
        <qualifiedname>vrna_mx_mfe_s::l_min_F5</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="134" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="134" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a794ba42ca5afa5320a2da88554928516" prot="public" static="no" mutable="no">
        <type>int **</type>
        <definition>int** vrna_mx_mfe_s::l_max_F5</definition>
        <argsstring></argsstring>
        <name>l_max_F5</name>
        <qualifiedname>vrna_mx_mfe_s::l_max_F5</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="135" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="135" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1aad6fc641a5815149b8d938ca277019a5" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::k_min_F5</definition>
        <argsstring></argsstring>
        <name>k_min_F5</name>
        <qualifiedname>vrna_mx_mfe_s::k_min_F5</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="136" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="136" bodyend="-1"/>
      </memberdef>
      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a321a00180a1d046796328d0a9b66ec81" prot="public" static="no" mutable="no">
        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::k_max_F5</definition>
        <argsstring></argsstring>
        <name>k_max_F5</name>
        <qualifiedname>vrna_mx_mfe_s::k_max_F5</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <qualifiedname>vrna_mx_mfe_s::l_max_FcH</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
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        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <argsstring></argsstring>
        <name>k_max_FcH</name>
        <qualifiedname>vrna_mx_mfe_s::k_max_FcH</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <type>int **</type>
        <definition>int** vrna_mx_mfe_s::E_FcI</definition>
        <argsstring></argsstring>
        <name>E_FcI</name>
        <qualifiedname>vrna_mx_mfe_s::E_FcI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <argsstring></argsstring>
        <name>l_min_FcI</name>
        <qualifiedname>vrna_mx_mfe_s::l_min_FcI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="182" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="182" bodyend="-1"/>
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        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::l_max_FcI</definition>
        <argsstring></argsstring>
        <name>l_max_FcI</name>
        <qualifiedname>vrna_mx_mfe_s::l_max_FcI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="183" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="183" bodyend="-1"/>
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        <argsstring></argsstring>
        <name>k_min_FcI</name>
        <qualifiedname>vrna_mx_mfe_s::k_min_FcI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="184" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="184" bodyend="-1"/>
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        <argsstring></argsstring>
        <name>k_max_FcI</name>
        <qualifiedname>vrna_mx_mfe_s::k_max_FcI</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="185" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="185" bodyend="-1"/>
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        <type>int **</type>
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        <argsstring></argsstring>
        <name>E_FcM</name>
        <qualifiedname>vrna_mx_mfe_s::E_FcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::l_min_FcM</definition>
        <argsstring></argsstring>
        <name>l_min_FcM</name>
        <qualifiedname>vrna_mx_mfe_s::l_min_FcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="188" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="188" bodyend="-1"/>
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        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::l_max_FcM</definition>
        <argsstring></argsstring>
        <name>l_max_FcM</name>
        <qualifiedname>vrna_mx_mfe_s::l_max_FcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="189" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="189" bodyend="-1"/>
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      <memberdef kind="variable" id="structvrna__mx__mfe__s_1a36089cee4d38f465f79db7e3589693a7" prot="public" static="no" mutable="no">
        <type>int</type>
        <definition>int vrna_mx_mfe_s::k_min_FcM</definition>
        <argsstring></argsstring>
        <name>k_min_FcM</name>
        <qualifiedname>vrna_mx_mfe_s::k_min_FcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/datastructures/dp_matrices.h" line="190" column="17" bodyfile="ViennaRNA/datastructures/dp_matrices.h" bodystart="190" bodyend="-1"/>
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        <type>int</type>
        <definition>int vrna_mx_mfe_s::k_max_FcM</definition>
        <argsstring></argsstring>
        <name>k_max_FcM</name>
        <qualifiedname>vrna_mx_mfe_s::k_max_FcM</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::E_F5_rem</definition>
        <argsstring></argsstring>
        <name>E_F5_rem</name>
        <qualifiedname>vrna_mx_mfe_s::E_F5_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
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        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::E_F3_rem</definition>
        <argsstring></argsstring>
        <name>E_F3_rem</name>
        <qualifiedname>vrna_mx_mfe_s::E_F3_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <type>int *</type>
        <definition>int* vrna_mx_mfe_s::E_C_rem</definition>
        <argsstring></argsstring>
        <name>E_C_rem</name>
        <qualifiedname>vrna_mx_mfe_s::E_C_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
        </detaileddescription>
        <inbodydescription>
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        <argsstring></argsstring>
        <name>E_M_rem</name>
        <qualifiedname>vrna_mx_mfe_s::E_M_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
        <detaileddescription>
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        <inbodydescription>
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        <inbodydescription>
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        <argsstring></argsstring>
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        <qualifiedname>vrna_mx_mfe_s::E_M2_rem</qualifiedname>
        <briefdescription>
        </briefdescription>
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        <inbodydescription>
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<para>Minimum Free Energy (MFE) Dynamic Programming (DP) matrices data structure required within the <ref refid="group__fold__compound_1ga1b0cef17fd40466cef5968eaeeff6166" kindref="member">vrna_fold_compound_t</ref>. </para>
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