Classified Dynamic Programming Variants — ViennaRNA Package

# Classified Dynamic Programming Variants

Usually, thermodynamic properties using the basic recursions for Minimum Free Energy (MFE) Algorithms, Partition Function and Equilibrium Properties, and so forth, are computed over the entire structure space. However, sometimes it is desired to partition the structure space a priori and compute the above properties for each of the resulting partitions. This approach directly leads to Classified Dynamic Programming.

Specialized Modules:

- Distance Based Partitioning of the Secondary Structure Space
- Density of States

group Classified Dynamic Programming Variants