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  <compounddef id="group__paths__deprecated" kind="group">
    <compoundname>paths_deprecated</compoundname>
    <title>Deprecated Interface for (Re-)folding Paths, Saddle Points, and Energy Barriers</title>
    <sectiondef kind="typedef">
      <memberdef kind="typedef" id="group__paths__deprecated_1gab6b8737d5377e70a7815d04aae7fd884" prot="public" static="no">
        <type>struct <ref refid="structvrna__path__s" kindref="compound">vrna_path_s</ref></type>
        <definition>typedef struct vrna_path_s path_t</definition>
        <argsstring></argsstring>
        <name>path_t</name>
        <briefdescription>
<para>Old typename of <ref refid="structvrna__path__s" kindref="compound">vrna_path_s</ref>. </para>
        </briefdescription>
        <detaileddescription>
<para><xrefsect id="deprecated_1_deprecated000164"><xreftitle>Deprecated</xreftitle><xrefdescription><para>Use <ref refid="group__paths_1ga818d4f3d1cf8723d6905990b08d909fe" kindref="member">vrna_path_t</ref> instead!</para>
</xrefdescription></xrefsect></para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/landscape/paths.h" line="48" column="27" bodyfile="ViennaRNA/landscape/paths.h" bodystart="48" bodyend="-1"/>
      </memberdef>
    </sectiondef>
    <sectiondef kind="func">
      <memberdef kind="function" id="group__paths__deprecated_1ga4c0dabf032c04eeab9c7370d15db6ad2" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>int</type>
        <definition>int find_saddle</definition>
        <argsstring>(const char *seq, const char *s1, const char *s2, int width)</argsstring>
        <name>find_saddle</name>
        <param>
          <type>const char *</type>
          <declname>seq</declname>
        </param>
        <param>
          <type>const char *</type>
          <declname>s1</declname>
        </param>
        <param>
          <type>const char *</type>
          <declname>s2</declname>
        </param>
        <param>
          <type>int</type>
          <declname>width</declname>
        </param>
        <briefdescription>
<para>Find energy of a saddle point between 2 structures (search only direct path). </para>
        </briefdescription>
        <detaileddescription>
<para><xrefsect id="deprecated_1_deprecated000161"><xreftitle>Deprecated</xreftitle><xrefdescription><para>Use <ref refid="group__paths__direct_1gad77dbfa125158f534147c0015a849bc3" kindref="member">vrna_path_findpath_saddle()</ref> instead!</para>
</xrefdescription></xrefsect></para>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername>seq</parametername>
</parameternamelist>
<parameterdescription>
<para>RNA sequence </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>s1</parametername>
</parameternamelist>
<parameterdescription>
<para>A pointer to the character array where the first secondary structure in dot-bracket notation will be written to </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>s2</parametername>
</parameternamelist>
<parameterdescription>
<para>A pointer to the character array where the second secondary structure in dot-bracket notation will be written to </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>width</parametername>
</parameternamelist>
<parameterdescription>
<para>integer how many strutures are being kept during the search </para>
</parameterdescription>
</parameteritem>
</parameterlist>
<simplesect kind="return"><para>the saddle energy in 10cal/mol </para>
</simplesect>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/landscape/findpath.h" line="178" column="17" declfile="ViennaRNA/landscape/findpath.h" declline="178" declcolumn="17"/>
      </memberdef>
      <memberdef kind="function" id="group__paths__deprecated_1ga9056421d716ae89f0ed3f107627f395b" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type>void</type>
        <definition>void free_path</definition>
        <argsstring>(vrna_path_t *path)</argsstring>
        <name>free_path</name>
        <param>
          <type><ref refid="group__paths_1ga818d4f3d1cf8723d6905990b08d909fe" kindref="member">vrna_path_t</ref> *</type>
          <declname>path</declname>
        </param>
        <briefdescription>
<para>Free memory allocated by <ref refid="group__paths__deprecated_1ga58ae3a0e97028833e085d67e7e2b4c78" kindref="member">get_path()</ref> function. </para>
        </briefdescription>
        <detaileddescription>
<para><xrefsect id="deprecated_1_deprecated000162"><xreftitle>Deprecated</xreftitle><xrefdescription><para>Use <ref refid="group__paths_1ga3763dc16760d09277a1b1c3f3061d0c7" kindref="member">vrna_path_free()</ref> instead!</para>
</xrefdescription></xrefsect></para>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername>path</parametername>
</parameternamelist>
<parameterdescription>
<para>pointer to memory to be freed </para>
</parameterdescription>
</parameteritem>
</parameterlist>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/landscape/findpath.h" line="192" column="18" declfile="ViennaRNA/landscape/findpath.h" declline="192" declcolumn="18"/>
      </memberdef>
      <memberdef kind="function" id="group__paths__deprecated_1ga58ae3a0e97028833e085d67e7e2b4c78" prot="public" static="no" const="no" explicit="no" inline="no" virt="non-virtual">
        <type><ref refid="group__paths_1ga818d4f3d1cf8723d6905990b08d909fe" kindref="member">vrna_path_t</ref> *</type>
        <definition>vrna_path_t * get_path</definition>
        <argsstring>(const char *seq, const char *s1, const char *s2, int width)</argsstring>
        <name>get_path</name>
        <param>
          <type>const char *</type>
          <declname>seq</declname>
        </param>
        <param>
          <type>const char *</type>
          <declname>s1</declname>
        </param>
        <param>
          <type>const char *</type>
          <declname>s2</declname>
        </param>
        <param>
          <type>int</type>
          <declname>width</declname>
        </param>
        <briefdescription>
<para>Find refolding path between 2 structures (search only direct path). </para>
        </briefdescription>
        <detaileddescription>
<para><xrefsect id="deprecated_1_deprecated000163"><xreftitle>Deprecated</xreftitle><xrefdescription><para>Use <ref refid="group__paths__direct_1ga2fed8ff126f5becd82cedd81a25c9bf0" kindref="member">vrna_path_findpath()</ref> instead!</para>
</xrefdescription></xrefsect></para>
<para><parameterlist kind="param"><parameteritem>
<parameternamelist>
<parametername>seq</parametername>
</parameternamelist>
<parameterdescription>
<para>RNA sequence </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>s1</parametername>
</parameternamelist>
<parameterdescription>
<para>A pointer to the character array where the first secondary structure in dot-bracket notation will be written to </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>s2</parametername>
</parameternamelist>
<parameterdescription>
<para>A pointer to the character array where the second secondary structure in dot-bracket notation will be written to </para>
</parameterdescription>
</parameteritem>
<parameteritem>
<parameternamelist>
<parametername>width</parametername>
</parameternamelist>
<parameterdescription>
<para>integer how many strutures are being kept during the search </para>
</parameterdescription>
</parameteritem>
</parameterlist>
<simplesect kind="return"><para>direct refolding path between two structures </para>
</simplesect>
</para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/landscape/findpath.h" line="216" column="26" declfile="ViennaRNA/landscape/findpath.h" declline="216" declcolumn="26"/>
      </memberdef>
    </sectiondef>
    <briefdescription>
    </briefdescription>
    <detaileddescription>
    </detaileddescription>
  </compounddef>
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