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<para>Convert an input sequence to uppercase. </para>
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<para><xrefsect id="deprecated_1_deprecated000250"><xreftitle>Deprecated</xreftitle><xrefdescription><para>Use <ref refid="group__string__utils_1ga4f44dca03c9d708d68e64c0610bb9091" kindref="member">vrna_seq_toupper()</ref> instead! </para>
</xrefdescription></xrefsect></para>
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          <type>int</type>
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        <param>
          <type>const char</type>
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          <array>[]</array>
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<para>Create a random string using characters from a specified symbol set. </para>
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        <detaileddescription>
<para><xrefsect id="deprecated_1_deprecated000251"><xreftitle>Deprecated</xreftitle><xrefdescription><para>Use <ref refid="group__string__utils_1gab4714ab789de302ee19e0e7ea0766a3e" kindref="member">vrna_random_string()</ref> instead! </para>
</xrefdescription></xrefsect></para>
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        <argsstring>(const char *s1, const char *s2)</argsstring>
        <name>hamming</name>
        <param>
          <type>const char *</type>
          <declname>s1</declname>
        </param>
        <param>
          <type>const char *</type>
          <declname>s2</declname>
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<para>Calculate hamming distance between two sequences. </para>
        </briefdescription>
        <detaileddescription>
<para><xrefsect id="deprecated_1_deprecated000252"><xreftitle>Deprecated</xreftitle><xrefdescription><para>Use <ref refid="group__string__utils_1ga301798b43b6f66687985c725efd14f32" kindref="member">vrna_hamming_distance()</ref> instead! </para>
</xrefdescription></xrefsect></para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/utils/strings.h" line="451" column="17" declfile="ViennaRNA/utils/strings.h" declline="451" declcolumn="17"/>
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        <type>int</type>
        <definition>int hamming_bound</definition>
        <argsstring>(const char *s1, const char *s2, int n)</argsstring>
        <name>hamming_bound</name>
        <param>
          <type>const char *</type>
          <declname>s1</declname>
        </param>
        <param>
          <type>const char *</type>
          <declname>s2</declname>
        </param>
        <param>
          <type>int</type>
          <declname>n</declname>
        </param>
        <briefdescription>
<para>Calculate hamming distance between two sequences up to a specified length. </para>
        </briefdescription>
        <detaileddescription>
<para><xrefsect id="deprecated_1_deprecated000253"><xreftitle>Deprecated</xreftitle><xrefdescription><para>Use <ref refid="group__string__utils_1ga5d1c2271e79d9bcb52d4e68360763fb9" kindref="member">vrna_hamming_distance_bound()</ref> instead! </para>
</xrefdescription></xrefsect></para>
        </detaileddescription>
        <inbodydescription>
        </inbodydescription>
        <location file="ViennaRNA/utils/strings.h" line="462" column="17" declfile="ViennaRNA/utils/strings.h" declline="462" declcolumn="17"/>
      </memberdef>
    </sectiondef>
    <briefdescription>
<para>General utility- and helper-functions for RNA sequence and structure strings used throughout the ViennaRNA Package. </para>
    </briefdescription>
    <detaileddescription>
<para>, </para>
    </detaileddescription>
    <programlisting>
<codeline lineno="1"><highlight class="preprocessor">#ifndef<sp/>VIENNA_RNA_PACKAGE_STRING_UTILS_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="2"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VIENNA_RNA_PACKAGE_STRING_UTILS_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="3"><highlight class="normal"></highlight></codeline>
<codeline lineno="4"><highlight class="normal"></highlight><highlight class="preprocessor">#ifdef<sp/>VRNA_WARN_DEPRECATED</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="5"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>if<sp/>defined(__clang__)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="6"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func<sp/>__attribute__<sp/>((deprecated(&quot;&quot;,<sp/>msg)))</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="7"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>elif<sp/>defined(__GNUC__)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="8"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func<sp/>__attribute__<sp/>((deprecated(msg)))</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="9"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>else</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="10"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/><sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="11"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="12"><highlight class="normal"></highlight><highlight class="preprocessor">#else</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="13"><highlight class="normal"></highlight><highlight class="preprocessor">#<sp/>define<sp/>DEPRECATED(func,<sp/>msg)<sp/>func</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="14"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="15"><highlight class="normal"></highlight></codeline>
<codeline lineno="21"><highlight class="normal"></highlight></codeline>
<codeline lineno="26"><highlight class="normal"></highlight></codeline>
<codeline lineno="27"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;stdarg.h&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="28"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="datastructures_2basic_8h" kindref="compound">ViennaRNA/datastructures/basic.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="29"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;<ref refid="sequences_2utils_8h" kindref="compound">ViennaRNA/sequences/utils.h</ref>&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="30"><highlight class="normal"></highlight></codeline>
<codeline lineno="34" refid="group__string__utils_1ga03943706e48069237cd57f2d35ca987e" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>XSTR(s)<sp/>STR(s)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="35"><highlight class="normal"></highlight></codeline>
<codeline lineno="39" refid="group__string__utils_1ga6388870e639eee9c0a69446876f1f8cc" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>STR(s)<sp/>#s</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="40"><highlight class="normal"></highlight></codeline>
<codeline lineno="41"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>FILENAME_MAX_LENGTH</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="42"><highlight class="normal"></highlight></codeline>
<codeline lineno="49" refid="group__string__utils_1gafb228174279df9486a5cb56ac0bc79a3" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>FILENAME_MAX_LENGTH<sp/><sp/><sp/>80</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="50"><highlight class="normal"></highlight></codeline>
<codeline lineno="57" refid="group__string__utils_1ga33c3b1826b8e2739f09f111ec719ded5" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>FILENAME_ID_LENGTH<sp/><sp/><sp/><sp/>42</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="58"><highlight class="normal"></highlight></codeline>
<codeline lineno="59"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="60"><highlight class="normal"></highlight></codeline>
<codeline lineno="61"><highlight class="normal"></highlight><highlight class="preprocessor">#ifdef<sp/>HAVE_CONFIG_H</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="62"><highlight class="normal"></highlight><highlight class="preprocessor">#include<sp/>&lt;config.h&gt;</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="63"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>HAVE_STRDUP</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="64"><highlight class="normal"></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight></codeline>
<codeline lineno="65"><highlight class="normal">strdup(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*s);</highlight></codeline>
<codeline lineno="66"><highlight class="normal"></highlight></codeline>
<codeline lineno="67"><highlight class="normal"></highlight></codeline>
<codeline lineno="68"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="69"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="70"><highlight class="normal"></highlight></codeline>
<codeline lineno="89"><highlight class="normal"></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight></codeline>
<codeline lineno="90" refid="group__string__utils_1ga8429d7d84d7b0c7d77cda7c4ceff0947" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1ga8429d7d84d7b0c7d77cda7c4ceff0947" kindref="member">vrna_strdup_printf</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*format,</highlight></codeline>
<codeline lineno="91"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>...);</highlight></codeline>
<codeline lineno="92"><highlight class="normal"></highlight></codeline>
<codeline lineno="93"><highlight class="normal"></highlight></codeline>
<codeline lineno="108"><highlight class="normal"></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight></codeline>
<codeline lineno="109" refid="group__string__utils_1ga84a3a0400df93050b650a0d31afd1e54" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1ga84a3a0400df93050b650a0d31afd1e54" kindref="member">vrna_strdup_vprintf</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*format,</highlight></codeline>
<codeline lineno="110"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>va_list<sp/><sp/><sp/><sp/><sp/>argp);</highlight></codeline>
<codeline lineno="111"><highlight class="normal"></highlight></codeline>
<codeline lineno="112"><highlight class="normal"></highlight></codeline>
<codeline lineno="131"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="132" refid="group__string__utils_1gac0771ec71316023067f2aae61a5aa0fb" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1gac0771ec71316023067f2aae61a5aa0fb" kindref="member">vrna_strcat_printf</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**dest,</highlight></codeline>
<codeline lineno="133"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*format,</highlight></codeline>
<codeline lineno="134"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>...);</highlight></codeline>
<codeline lineno="135"><highlight class="normal"></highlight></codeline>
<codeline lineno="136"><highlight class="normal"></highlight></codeline>
<codeline lineno="149"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="150" refid="group__string__utils_1ga122df216996ba62fd5056b7743e3131a" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1ga122df216996ba62fd5056b7743e3131a" kindref="member">vrna_strcat_vprintf</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>**dest,</highlight></codeline>
<codeline lineno="151"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*format,</highlight></codeline>
<codeline lineno="152"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>va_list<sp/><sp/><sp/><sp/><sp/>args);</highlight></codeline>
<codeline lineno="153"><highlight class="normal"></highlight></codeline>
<codeline lineno="154"><highlight class="normal"></highlight></codeline>
<codeline lineno="159" refid="group__string__utils_1ga658ff8ea3e4ae6838d77ece7024a583f" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_TRIM_LEADING<sp/><sp/><sp/><sp/><sp/><sp/><sp/>1U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="160"><highlight class="normal"></highlight></codeline>
<codeline lineno="165" refid="group__string__utils_1ga4b551fba1b2bbecafd335471b2c002dd" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_TRIM_TRAILING<sp/><sp/><sp/><sp/><sp/><sp/>2U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="166"><highlight class="normal"></highlight></codeline>
<codeline lineno="171" refid="group__string__utils_1gac500a0f17fff9c60ac98ed178f0a8fa3" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_TRIM_IN_BETWEEN<sp/><sp/><sp/><sp/>4U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="172"><highlight class="normal"></highlight></codeline>
<codeline lineno="177" refid="group__string__utils_1ga974e5e82e496e20290ec0f54c0e1d1da" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_TRIM_SUBST_BY_FIRST<sp/><sp/>8U</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="178"><highlight class="normal"></highlight></codeline>
<codeline lineno="183" refid="group__string__utils_1gab6272ec12f482870fa81d3d84d9b7370" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_TRIM_DEFAULT<sp/><sp/><sp/><sp/><sp/><sp/><sp/>(<sp/>VRNA_TRIM_LEADING<sp/>|<sp/>VRNA_TRIM_TRAILING<sp/>)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="184"><highlight class="normal"></highlight></codeline>
<codeline lineno="189" refid="group__string__utils_1ga2ad8cad99ec119999964dd6e245cbb73" refkind="member"><highlight class="normal"></highlight><highlight class="preprocessor">#define<sp/>VRNA_TRIM_ALL<sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>(<sp/>VRNA_TRIM_DEFAULT<sp/>|<sp/>VRNA_TRIM_IN_BETWEEN<sp/>)</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="190"><highlight class="normal"></highlight></codeline>
<codeline lineno="237"><highlight class="normal"></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="238" refid="group__string__utils_1gad4a36bfad05f22ad5d33d00d45aa9b01" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1gad4a36bfad05f22ad5d33d00d45aa9b01" kindref="member">vrna_strtrim</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">,</highlight></codeline>
<codeline lineno="239"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/>*delimiters,</highlight></codeline>
<codeline lineno="240"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>keep,</highlight></codeline>
<codeline lineno="241"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>options);</highlight></codeline>
<codeline lineno="242"><highlight class="normal"></highlight></codeline>
<codeline lineno="243"><highlight class="normal"></highlight></codeline>
<codeline lineno="289"><highlight class="normal"></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>**</highlight></codeline>
<codeline lineno="290" refid="group__string__utils_1gaf1bdff12ea8383c5d8eef5f9ef9fcefe" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1gaf1bdff12ea8383c5d8eef5f9ef9fcefe" kindref="member">vrna_strsplit</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">,</highlight></codeline>
<codeline lineno="291"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*delimiter);</highlight></codeline>
<codeline lineno="292"><highlight class="normal"></highlight></codeline>
<codeline lineno="293"><highlight class="normal"></highlight></codeline>
<codeline lineno="294"><highlight class="normal"></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight></codeline>
<codeline lineno="295"><highlight class="normal">vrna_strjoin(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>**strings,</highlight></codeline>
<codeline lineno="296"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*delimiter);</highlight></codeline>
<codeline lineno="297"><highlight class="normal"></highlight></codeline>
<codeline lineno="298"><highlight class="normal"></highlight></codeline>
<codeline lineno="299"><highlight class="normal"><ref refid="group__array__utils_1ga97302e41c5c33faae998eb956c8f1f91" kindref="member">vrna_array</ref>(</highlight><highlight class="keywordtype">double</highlight><highlight class="normal">)</highlight></codeline>
<codeline lineno="300"><highlight class="normal">vrna_str_to_dbl_array(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>*str,</highlight></codeline>
<codeline lineno="301"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/><sp/><sp/>*delimiter,</highlight></codeline>
<codeline lineno="302"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">unsigned</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/>options);</highlight></codeline>
<codeline lineno="303"><highlight class="normal"></highlight></codeline>
<codeline lineno="304"><highlight class="normal"></highlight></codeline>
<codeline lineno="312"><highlight class="normal"></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight></codeline>
<codeline lineno="313" refid="group__string__utils_1gab4714ab789de302ee19e0e7ea0766a3e" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1gab4714ab789de302ee19e0e7ea0766a3e" kindref="member">vrna_random_string</ref>(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>l,</highlight></codeline>
<codeline lineno="314"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>symbols[]);</highlight></codeline>
<codeline lineno="315"><highlight class="normal"></highlight></codeline>
<codeline lineno="316"><highlight class="normal"></highlight></codeline>
<codeline lineno="324"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="325" refid="group__string__utils_1ga301798b43b6f66687985c725efd14f32" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1ga301798b43b6f66687985c725efd14f32" kindref="member">vrna_hamming_distance</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*s1,</highlight></codeline>
<codeline lineno="326"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*s2);</highlight></codeline>
<codeline lineno="327"><highlight class="normal"></highlight></codeline>
<codeline lineno="328"><highlight class="normal"></highlight></codeline>
<codeline lineno="339"><highlight class="normal"></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="340" refid="group__string__utils_1ga5d1c2271e79d9bcb52d4e68360763fb9" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1ga5d1c2271e79d9bcb52d4e68360763fb9" kindref="member">vrna_hamming_distance_bound</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*s1,</highlight></codeline>
<codeline lineno="341"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*s2,</highlight></codeline>
<codeline lineno="342"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>n);</highlight></codeline>
<codeline lineno="343"><highlight class="normal"></highlight></codeline>
<codeline lineno="344"><highlight class="normal"></highlight></codeline>
<codeline lineno="350"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="351" refid="group__string__utils_1ga4f44dca03c9d708d68e64c0610bb9091" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1ga4f44dca03c9d708d68e64c0610bb9091" kindref="member">vrna_seq_toupper</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*sequence);</highlight></codeline>
<codeline lineno="352"><highlight class="normal"></highlight></codeline>
<codeline lineno="353"><highlight class="normal"></highlight></codeline>
<codeline lineno="368"><highlight class="normal"></highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="369" refid="group__string__utils_1gae15cbc5999a67c90f45538e42c3201fe" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1gae15cbc5999a67c90f45538e42c3201fe" kindref="member">vrna_seq_reverse</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*sequence);</highlight></codeline>
<codeline lineno="370"><highlight class="normal"></highlight></codeline>
<codeline lineno="371"><highlight class="normal"></highlight></codeline>
<codeline lineno="383"><highlight class="normal"></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight></codeline>
<codeline lineno="384" refid="group__string__utils_1ga458d5a8cbec709665426372e3aee93b8" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1ga458d5a8cbec709665426372e3aee93b8" kindref="member">vrna_cut_point_insert</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">,</highlight></codeline>
<codeline lineno="385"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>cp);</highlight></codeline>
<codeline lineno="386"><highlight class="normal"></highlight></codeline>
<codeline lineno="387"><highlight class="normal"></highlight></codeline>
<codeline lineno="400"><highlight class="normal"></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*</highlight></codeline>
<codeline lineno="401" refid="group__string__utils_1gaea2daba17812f6581f559afda27fcbf8" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1gaea2daba17812f6581f559afda27fcbf8" kindref="member">vrna_cut_point_remove</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">,</highlight></codeline>
<codeline lineno="402"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>*cp);</highlight></codeline>
<codeline lineno="403"><highlight class="normal"></highlight></codeline>
<codeline lineno="404"><highlight class="normal"></highlight></codeline>
<codeline lineno="405"><highlight class="normal"></highlight></codeline>
<codeline lineno="414"><highlight class="normal"></highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/>*</highlight></codeline>
<codeline lineno="415" refid="group__string__utils_1gac90f8463f175ad2f289a89e2fdc6a956" refkind="member"><highlight class="normal"><ref refid="group__string__utils_1gac90f8463f175ad2f289a89e2fdc6a956" kindref="member">vrna_strchr</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/><sp/>*</highlight><highlight class="keywordtype">string</highlight><highlight class="normal">,</highlight></codeline>
<codeline lineno="416"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>c,</highlight></codeline>
<codeline lineno="417"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">size_t</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/>n);</highlight></codeline>
<codeline lineno="418"><highlight class="normal"></highlight></codeline>
<codeline lineno="419"><highlight class="normal"></highlight></codeline>
<codeline lineno="423"><highlight class="normal"></highlight></codeline>
<codeline lineno="424"><highlight class="normal"></highlight><highlight class="preprocessor">#ifndef<sp/>VRNA_DISABLE_BACKWARD_COMPATIBILITY</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="425"><highlight class="normal"></highlight></codeline>
<codeline lineno="430"><highlight class="normal">DEPRECATED(</highlight><highlight class="keywordtype">void</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="431"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="strings_8h_1a17b796b806f96b70382077fb5bc519bb" kindref="member">str_uppercase</ref>(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*sequence),</highlight></codeline>
<codeline lineno="432" refid="strings_8h_1a17b796b806f96b70382077fb5bc519bb" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_seq_toupper()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="433"><highlight class="normal"></highlight></codeline>
<codeline lineno="439"><highlight class="normal">DEPRECATED(</highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*<ref refid="strings_8h_1ad8f94747caa62f84fa50ae3c39c2cd91" kindref="member">random_string</ref>(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/>l,</highlight></codeline>
<codeline lineno="440"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>symbols[]),</highlight></codeline>
<codeline lineno="441" refid="strings_8h_1ad8f94747caa62f84fa50ae3c39c2cd91" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_random_string()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="442"><highlight class="normal"></highlight></codeline>
<codeline lineno="448"><highlight class="normal">DEPRECATED(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="449"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="strings_8h_1ad9dc7bfc9aa664dc6698f17ce07fc7e7" kindref="member">hamming</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*s1,</highlight></codeline>
<codeline lineno="450"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*s2),</highlight></codeline>
<codeline lineno="451" refid="strings_8h_1ad9dc7bfc9aa664dc6698f17ce07fc7e7" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_hamming_distance()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="452"><highlight class="normal"></highlight></codeline>
<codeline lineno="458"><highlight class="normal">DEPRECATED(</highlight><highlight class="keywordtype">int</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="459"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><ref refid="strings_8h_1a96d3c36717d624514055ce201cab1542" kindref="member">hamming_bound</ref>(</highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*s1,</highlight></codeline>
<codeline lineno="460"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keyword">const</highlight><highlight class="normal"><sp/></highlight><highlight class="keywordtype">char</highlight><highlight class="normal"><sp/>*s2,</highlight></codeline>
<codeline lineno="461"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="keywordtype">int</highlight><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/>n),</highlight></codeline>
<codeline lineno="462" refid="strings_8h_1a96d3c36717d624514055ce201cab1542" refkind="member"><highlight class="normal"><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/><sp/></highlight><highlight class="stringliteral">&quot;Use<sp/>vrna_hamming_distance_bound()<sp/>instead&quot;</highlight><highlight class="normal">);</highlight></codeline>
<codeline lineno="463"><highlight class="normal"></highlight></codeline>
<codeline lineno="464"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight><highlight class="normal"></highlight></codeline>
<codeline lineno="465"><highlight class="normal"></highlight></codeline>
<codeline lineno="466"><highlight class="normal"></highlight><highlight class="preprocessor">#endif</highlight></codeline>
    </programlisting>
    <location file="ViennaRNA/utils/strings.h"/>
  </compounddef>
</doxygen>
