LICENSE.3rd_party.txt
LICENSE.txt
Qt5Core.dll
Qt5Gui.dll
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data
data/DBXRefRegistry.txt
data/adapters
data/adapters/adapters.fasta
data/adapters/illumina
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data/adapters/illumina/TruSeq2-PE.fa
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data/adapters/illumina/TruSeq3-PE-2.fa
data/adapters/illumina/TruSeq3-PE.fa
data/adapters/illumina/TruSeq3-SE.fa
data/back_translation
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data/back_translation/Bacteria/Bacillus_subtilis.cut
data/back_translation/Bacteria/Escherichia_coli.cut
data/back_translation/Bacteria/Haemophilus_influenzae.cut
data/back_translation/Bacteria/Helicobacter_pylori.cut
data/back_translation/Bacteria/Listeria_monocytogenes.cut
data/back_translation/Bacteria/Neisseria_meningitidis.cut
data/back_translation/Bacteria/Salmonella_typhimurium_LT2.cut
data/back_translation/Bacteria/Streptomyces_coelicolor_A3(2).cut
data/back_translation/Bacteria/Sulfolobus_solfataricus_P2.cut
data/back_translation/Invertebrates
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data/back_translation/Invertebrates/Caenorhabditis_elegans.cut
data/back_translation/Invertebrates/Drosophila_melanogaster_(fruit_fly).cut
data/back_translation/Invertebrates/Plasmodium_falciparum_(malaria_parasite_P._falciparum).cut
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data/back_translation/Viruses
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data/back_translation/Yeast
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data/position_weight_matrix/UniPROBE/Cell08/Hoxd8_2644.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Ipf1_3815.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Irx2_0900.3.pwm
data/position_weight_matrix/UniPROBE/Cell08/Irx3_0920.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Irx3_2226.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Irx4_2242.3.pwm
data/position_weight_matrix/UniPROBE/Cell08/Irx5_2385.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Irx6_2623.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Isl2_3430.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Isx_3445.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lbx2_3869.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lhx1_2240.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lhx2_0953.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lhx3_3431.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lhx4_1719.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lhx5_2279.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lhx6_2272.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lhx6_3432.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lhx8_2247.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lhx9_3492.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Lmx1a_2238.2.pwm
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data/position_weight_matrix/UniPROBE/Cell08/Meis1_2335.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Meox1_2310.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Mrg1_2246.2.pwm
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data/position_weight_matrix/UniPROBE/Cell08/Msx3_3206.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx1-1_3856.3.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx1-2_3214.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx2-2_2823.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx2-3_3435.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx2-4_3074.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx2-5_3436.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx2-6_3437.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx2-9_3082.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx3-1_2923.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx6-1_2825.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Nkx6-3_3446.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Obox1_3970.2.pwm
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data/position_weight_matrix/UniPROBE/Cell08/Og2x_3719.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Otp_3496.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Otx1_2325.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Otx2_3441.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pax4_3989.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pax6_3838.3.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pax7_3783.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pbx1_3203.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Phox2a_3947.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Phox2b_3948.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pitx1_2312.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pitx2_2274.3.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pitx3_3497.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pknox1_2364.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pknox2_3077.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou1f1_3818.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou2f1_3081.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou2f2_3748.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou2f3_3986.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou3f1_3819.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou3f2_2824.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou3f3_3235.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou3f4_3773.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou4f3_2791.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou6f1_1731.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Pou6f1_3733.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Prop1_3949.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Prrx1_3442.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Prrx2_3072.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Rax_3443.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Rhox11_1765.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Rhox11_2205.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Rhox6_4251.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Shox2_2641.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Six1_0935.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Six2_2307.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Six3_1732.2.pwm
data/position_weight_matrix/UniPROBE/Cell08/Six4_2860.1.pwm
data/position_weight_matrix/UniPROBE/Cell08/Six6_2267.4.pwm
data/position_weight_matrix/UniPROBE/Cell08/Six6_2267.5.pwm
data/position_weight_matrix/UniPROBE/Cell08/Tcf1_2666.2.pwm
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data/position_weight_matrix/UniPROBE/Cell08/Titf1_1722.2.pwm
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data/position_weight_matrix/UniPROBE/Cell08/Vax1_3499.1.pwm
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data/position_weight_matrix/UniPROBE/Cell08/Vsx1_1728.1.pwm
data/position_weight_matrix/UniPROBE/GR09
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data/position_weight_matrix/UniPROBE/GR09/Aro80.pwm
data/position_weight_matrix/UniPROBE/GR09/Asg1.pwm
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data/position_weight_matrix/UniPROBE/GR09/Cbf1.pwm
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data/position_weight_matrix/UniPROBE/GR09/Cup9.pwm
data/position_weight_matrix/UniPROBE/GR09/Ecm22.pwm
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data/position_weight_matrix/UniPROBE/GR09/Gal4.pwm
data/position_weight_matrix/UniPROBE/GR09/Gat1.pwm
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data/position_weight_matrix/UniPROBE/GR09/Gln3.pwm
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data/position_weight_matrix/UniPROBE/NBT06
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data/position_weight_matrix/UniPROBE/NBT06/Oct-1.pwm
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data/position_weight_matrix/UniPROBE/NBT06/Zif268.pwm
data/position_weight_matrix/UniPROBE/PNAS08
data/position_weight_matrix/UniPROBE/PNAS08/Cgd2_3490.pwm
data/position_weight_matrix/UniPROBE/PNAS08/PF14_0633.pwm
data/position_weight_matrix/UniPROBE/PNAS08/PFF0200c.pwm
data/position_weight_matrix/UniPROBE/all_uniprobe.csv
data/primer3
data/primer3/drosophila.w.transposons.txt
data/primer3/humrep_and_simple.txt
data/primer3/rodent_ref.txt
data/primer3/rodrep_and_simple.txt
data/query_samples
data/query_samples/RepeatsWithORF.uql
data/query_samples/SimpleGene.uql
data/samples
data/samples/ABIF
data/samples/ABIF/A01.abi
data/samples/ACE
data/samples/ACE/BL060C3.ace
data/samples/ACE/K26.ace
data/samples/APR
data/samples/APR/DNA.apr
data/samples/APR/gyrA.apr
data/samples/Assembly
data/samples/Assembly/chrM.fa
data/samples/Assembly/chrM.sam
data/samples/Assembly/chrM.sorted.bam
data/samples/CLUSTALW
data/samples/CLUSTALW/COI.aln
data/samples/CLUSTALW/HIV-1.aln
data/samples/CLUSTALW/ty3.aln.gz
data/samples/EMBL
data/samples/EMBL/AF177870.emb
data/samples/EMBL/AL000263.emb
data/samples/FASTA
data/samples/FASTA/human_T1.fa
data/samples/FASTQ
data/samples/FASTQ/eas.fastq
data/samples/GFF
data/samples/GFF/5prime_utr_intron_A20.gff
data/samples/GFF/5prime_utr_intron_A21.gff
data/samples/Genbank
data/samples/Genbank/CVU55762.gb
data/samples/Genbank/NC_014267.1.gb
data/samples/Genbank/PBR322.gb
data/samples/Genbank/murine.gb
data/samples/Genbank/sars.gb
data/samples/HMM
data/samples/HMM/aligment15900.hmm
data/samples/MMDB
data/samples/MMDB/1CRN.prt
data/samples/MMDB/2JQS.prt
data/samples/MSF
data/samples/MSF/HMA.msf
data/samples/MSF/lipid8.msf
data/samples/MSF/pla2_20.msf
data/samples/Newick
data/samples/Newick/COI.nwk
data/samples/PDB
data/samples/PDB/1CF7.PDB
data/samples/PDB/1CRN.PDB
data/samples/PDB/3INS.PDB
data/samples/Raw
data/samples/Raw/raw.seq
data/samples/SCF
data/samples/SCF/90-JRI-07.scf
data/samples/Sanger
data/samples/Sanger/alignment.ugenedb
data/samples/Stockholm
data/samples/Stockholm/CBS.sto
data/samples/Stockholm/UPSK.sto
data/samples/Swiss-Prot
data/samples/Swiss-Prot/D0VTW9.txt
data/samples/Swiss-Prot/P01375.txt
data/samples/Swiss-Prot/P16152.txt
data/sitecon_models
data/sitecon_models/eukaryotic
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data/sitecon_models/eukaryotic/CEBPall.sitecon.gz
data/sitecon_models/eukaryotic/CLOCK.sitecon.gz
data/sitecon_models/eukaryotic/CRE.sitecon.gz
data/sitecon_models/eukaryotic/E2F1.sitecon.gz
data/sitecon_models/eukaryotic/E2F1DP1sel1.sitecon.gz
data/sitecon_models/eukaryotic/EGR1.sitecon.gz
data/sitecon_models/eukaryotic/Eklf.sitecon.gz
data/sitecon_models/eukaryotic/GATA1.sitecon.gz
data/sitecon_models/eukaryotic/GATA_ALL.sitecon.gz
data/sitecon_models/eukaryotic/Gata2.sitecon.gz
data/sitecon_models/eukaryotic/Gata3.sitecon.gz
data/sitecon_models/eukaryotic/HMG1.sitecon.gz
data/sitecon_models/eukaryotic/HNF1.sitecon.gz
data/sitecon_models/eukaryotic/HNF3_4.sitecon.gz
data/sitecon_models/eukaryotic/HNF4.sitecon.gz
data/sitecon_models/eukaryotic/MYOGsel3.sitecon.gz
data/sitecon_models/eukaryotic/MyoD.sitecon.gz
data/sitecon_models/eukaryotic/NF1.sitecon.gz
data/sitecon_models/eukaryotic/NFATp.sitecon.gz
data/sitecon_models/eukaryotic/NFkB_all.sitecon.gz
data/sitecon_models/eukaryotic/NFkB_hetero.sitecon.gz
data/sitecon_models/eukaryotic/NFkB_homo.sitecon.gz
data/sitecon_models/eukaryotic/Nf_e2.sitecon.gz
data/sitecon_models/eukaryotic/Nrf2.sitecon.gz
data/sitecon_models/eukaryotic/Oct1.sitecon.gz
data/sitecon_models/eukaryotic/Oct_all.sitecon.gz
data/sitecon_models/eukaryotic/PPRE.sitecon.gz
data/sitecon_models/eukaryotic/Pu1.sitecon.gz
data/sitecon_models/eukaryotic/SRE_can.sitecon.gz
data/sitecon_models/eukaryotic/STAT.sitecon.gz
data/sitecon_models/eukaryotic/STAT1.sitecon.gz
data/sitecon_models/eukaryotic/TTF1.sitecon.gz
data/sitecon_models/eukaryotic/USF.sitecon.gz
data/sitecon_models/eukaryotic/cMyc_can.sitecon.gz
data/sitecon_models/eukaryotic/er2.sitecon.gz
data/sitecon_models/eukaryotic/irf.sitecon.gz
data/sitecon_models/eukaryotic/isre.sitecon.gz
data/sitecon_models/eukaryotic/nfy.sitecon.gz
data/sitecon_models/eukaryotic/p53.sitecon.gz
data/sitecon_models/eukaryotic/setCREB.sitecon.gz
data/sitecon_models/eukaryotic/setCREBzag.sitecon.gz
data/sitecon_models/eukaryotic/srf_all.sitecon.gz
data/sitecon_models/eukaryotic/yy1.sitecon.gz
data/sitecon_models/prokaryotic
data/sitecon_models/prokaryotic/AgaR.sitecon.gz
data/sitecon_models/prokaryotic/AraC.sitecon.gz
data/sitecon_models/prokaryotic/ArcA.sitecon.gz
data/sitecon_models/prokaryotic/ArgR.sitecon.gz
data/sitecon_models/prokaryotic/CpxR.sitecon.gz
data/sitecon_models/prokaryotic/Crp.sitecon.gz
data/sitecon_models/prokaryotic/CysB.sitecon.gz
data/sitecon_models/prokaryotic/CytR.sitecon.gz
data/sitecon_models/prokaryotic/DeoR.sitecon.gz
data/sitecon_models/prokaryotic/DnaA.sitecon.gz
data/sitecon_models/prokaryotic/FUR.sitecon.gz
data/sitecon_models/prokaryotic/FadR.sitecon.gz
data/sitecon_models/prokaryotic/FlhDC.sitecon.gz
data/sitecon_models/prokaryotic/Fnr.sitecon.gz
data/sitecon_models/prokaryotic/Frur.sitecon.gz
data/sitecon_models/prokaryotic/GALR.sitecon.gz
data/sitecon_models/prokaryotic/GALS.sitecon.gz
data/sitecon_models/prokaryotic/GLPR.sitecon.gz
data/sitecon_models/prokaryotic/GNTR.sitecon.gz
data/sitecon_models/prokaryotic/HNS.sitecon.gz
data/sitecon_models/prokaryotic/ICLR.sitecon.gz
data/sitecon_models/prokaryotic/IHF.sitecon.gz
data/sitecon_models/prokaryotic/ISCR1.sitecon.gz
data/sitecon_models/prokaryotic/ISCR3.sitecon.gz
data/sitecon_models/prokaryotic/LEXA.sitecon.gz
data/sitecon_models/prokaryotic/Lrp.sitecon.gz
data/sitecon_models/prokaryotic/MALT.sitecon.gz
data/sitecon_models/prokaryotic/MARA.sitecon.gz
data/sitecon_models/prokaryotic/MELR.sitecon.gz
data/sitecon_models/prokaryotic/MLC.sitecon.gz
data/sitecon_models/prokaryotic/MODE.sitecon.gz
data/sitecon_models/prokaryotic/MetJ.sitecon.gz
data/sitecon_models/prokaryotic/MetR1.sitecon.gz
data/sitecon_models/prokaryotic/NAC.sitecon.gz
data/sitecon_models/prokaryotic/NAGC_new2.sitecon.gz
data/sitecon_models/prokaryotic/NANR.sitecon.gz
data/sitecon_models/prokaryotic/NARL2.sitecon.gz
data/sitecon_models/prokaryotic/NARP.sitecon.gz
data/sitecon_models/prokaryotic/NTRC.sitecon.gz
data/sitecon_models/prokaryotic/NarL.sitecon.gz
data/sitecon_models/prokaryotic/OmpR.sitecon.gz
data/sitecon_models/prokaryotic/OxyR.sitecon.gz
data/sitecon_models/prokaryotic/PHOB.sitecon.gz
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