# Figures and Graphs

In addition to the main areas of the SeqMonk display there are a number of additional figures and graphs which can be produced on demand. These can help to illustrate different properties of your data.

The currently available additional figures are:

### Histograms and distribution summaries

- The Probe Value Histogram
- The Probe Length Histogram
- The Reading Length Histogram
- The BoxWhisker Plot
- The Star Wars Plot
- The Cumulative Distribution Plot

### Clustering and correlation

- The DataStore Tree
- The Correlation Matrix
- The Probe List Overlap Matrix
- The Venn Diagram Plot
- The Hierarchical Cluster Plot

### Quantitation aggregation and summaries

- The Probe Trend Plot
- The Aligned Probes Plot
- The Quantitation Trend Plot
- The Domainogram Plot

### Comparison plots

- The Scatter Plot
- The MA Plot
- The Line Graph

### Hi-C Specific Plots

- The HiC Cis-Trans Scatterplot
- The HiC Length Histogram
- The HiC Heatmap Plot

### QC Plots

- The RNA-Seq QC plot
- The Small RNA QC plot