LICENSE
README.rst
pyproject.toml
setup.cfg
setup.py
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kent/LICENSE
kent/src/README
kent/src/htslib/LICENSE
kent/src/htslib/README
kent/src/htslib/bgzf.c
kent/src/htslib/bgzip.c
kent/src/htslib/config.h
kent/src/htslib/faidx.c
kent/src/htslib/hfile.c
kent/src/htslib/hfile_internal.h
kent/src/htslib/hfile_irods.c
kent/src/htslib/hfile_libcurl.c
kent/src/htslib/hfile_net.c
kent/src/htslib/hts.c
kent/src/htslib/hts_internal.h
kent/src/htslib/htsfile.c
kent/src/htslib/kfunc.c
kent/src/htslib/knetfile.c
kent/src/htslib/kstring.c
kent/src/htslib/md5.c
kent/src/htslib/plugin.c
kent/src/htslib/regidx.c
kent/src/htslib/sam.c
kent/src/htslib/synced_bcf_reader.c
kent/src/htslib/tabix.c
kent/src/htslib/tbx.c
kent/src/htslib/vcf.c
kent/src/htslib/vcf_sweep.c
kent/src/htslib/vcfutils.c
kent/src/htslib/version.h
kent/src/htslib/cram/cram.h
kent/src/htslib/cram/cram_codecs.c
kent/src/htslib/cram/cram_codecs.h
kent/src/htslib/cram/cram_decode.c
kent/src/htslib/cram/cram_decode.h
kent/src/htslib/cram/cram_encode.c
kent/src/htslib/cram/cram_encode.h
kent/src/htslib/cram/cram_external.c
kent/src/htslib/cram/cram_index.c
kent/src/htslib/cram/cram_index.h
kent/src/htslib/cram/cram_io.c
kent/src/htslib/cram/cram_io.h
kent/src/htslib/cram/cram_samtools.c
kent/src/htslib/cram/cram_samtools.h
kent/src/htslib/cram/cram_stats.c
kent/src/htslib/cram/cram_stats.h
kent/src/htslib/cram/cram_structs.h
kent/src/htslib/cram/files.c
kent/src/htslib/cram/mFILE.c
kent/src/htslib/cram/mFILE.h
kent/src/htslib/cram/misc.h
kent/src/htslib/cram/open_trace_file.c
kent/src/htslib/cram/open_trace_file.h
kent/src/htslib/cram/os.h
kent/src/htslib/cram/pooled_alloc.c
kent/src/htslib/cram/pooled_alloc.h
kent/src/htslib/cram/rANS_byte.h
kent/src/htslib/cram/rANS_static.c
kent/src/htslib/cram/rANS_static.h
kent/src/htslib/cram/sam_header.c
kent/src/htslib/cram/sam_header.h
kent/src/htslib/cram/string_alloc.c
kent/src/htslib/cram/string_alloc.h
kent/src/htslib/cram/thread_pool.c
kent/src/htslib/cram/thread_pool.h
kent/src/htslib/cram/vlen.c
kent/src/htslib/cram/vlen.h
kent/src/htslib/cram/zfio.c
kent/src/htslib/cram/zfio.h
kent/src/htslib/htslib/bgzf.h
kent/src/htslib/htslib/cram.h
kent/src/htslib/htslib/faidx.h
kent/src/htslib/htslib/hfile.h
kent/src/htslib/htslib/hts.h
kent/src/htslib/htslib/hts_defs.h
kent/src/htslib/htslib/kbitset.h
kent/src/htslib/htslib/kfunc.h
kent/src/htslib/htslib/khash.h
kent/src/htslib/htslib/khash_str2int.h
kent/src/htslib/htslib/klist.h
kent/src/htslib/htslib/knetfile.h
kent/src/htslib/htslib/kseq.h
kent/src/htslib/htslib/ksort.h
kent/src/htslib/htslib/kstring.h
kent/src/htslib/htslib/regidx.h
kent/src/htslib/htslib/sam.h
kent/src/htslib/htslib/synced_bcf_reader.h
kent/src/htslib/htslib/tbx.h
kent/src/htslib/htslib/vcf.h
kent/src/htslib/htslib/vcf_sweep.h
kent/src/htslib/htslib/vcfutils.h
kent/src/inc/LICENSE
kent/src/inc/ace.h
kent/src/inc/aliType.h
kent/src/inc/annoAssembly.h
kent/src/inc/annoFilter.h
kent/src/inc/annoFormatTab.h
kent/src/inc/annoFormatter.h
kent/src/inc/annoGrateWig.h
kent/src/inc/annoGrator.h
kent/src/inc/annoGratorQuery.h
kent/src/inc/annoOption.h
kent/src/inc/annoRow.h
kent/src/inc/annoStreamBigBed.h
kent/src/inc/annoStreamBigWig.h
kent/src/inc/annoStreamLongTabix.h
kent/src/inc/annoStreamTab.h
kent/src/inc/annoStreamVcf.h
kent/src/inc/annoStreamer.h
kent/src/inc/apacheLog.h
kent/src/inc/asParse.h
kent/src/inc/aveStats.h
kent/src/inc/axt.h
kent/src/inc/bPlusTree.h
kent/src/inc/bamFile.h
kent/src/inc/bandExt.h
kent/src/inc/base64.h
kent/src/inc/basicBed.h
kent/src/inc/bbiAlias.h
kent/src/inc/bbiFile.h
kent/src/inc/bedTabix.h
kent/src/inc/bigBed.h
kent/src/inc/bigWig.h
kent/src/inc/binRange.h
kent/src/inc/bits.h
kent/src/inc/blastParse.h
kent/src/inc/boxClump.h
kent/src/inc/boxLump.h
kent/src/inc/bwgInternal.h
kent/src/inc/cda.h
kent/src/inc/chain.h
kent/src/inc/chainBlock.h
kent/src/inc/chainConnect.h
kent/src/inc/chainToAxt.h
kent/src/inc/chainToPsl.h
kent/src/inc/cheapcgi.h
kent/src/inc/cirTree.h
kent/src/inc/codebias.h
kent/src/inc/common.h
kent/src/inc/correlate.h
kent/src/inc/crTree.h
kent/src/inc/crudeali.h
kent/src/inc/csv.h
kent/src/inc/diGraph.h
kent/src/inc/dlist.h
kent/src/inc/dnaLoad.h
kent/src/inc/dnaMarkov.h
kent/src/inc/dnaMotif.h
kent/src/inc/dnaseq.h
kent/src/inc/dnautil.h
kent/src/inc/dtdParse.h
kent/src/inc/dyOut.h
kent/src/inc/dystring.h
kent/src/inc/elmTree.h
kent/src/inc/emblParse.h
kent/src/inc/ens.h
kent/src/inc/errAbort.h
kent/src/inc/errCatch.h
kent/src/inc/fa.h
kent/src/inc/fieldedTable.h
kent/src/inc/filePath.h
kent/src/inc/flydna.h
kent/src/inc/fof.h
kent/src/inc/fq.h
kent/src/inc/fuzzyFind.h
kent/src/inc/gapCalc.h
kent/src/inc/gdf.h
kent/src/inc/genoFind.h
kent/src/inc/genomeRangeTree.h
kent/src/inc/gfClientLib.h
kent/src/inc/gfPcrLib.h
kent/src/inc/gfWebLib.h
kent/src/inc/gff.h
kent/src/inc/gff3.h
kent/src/inc/gfxPoly.h
kent/src/inc/gifLabel.h
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